Gene Information

Name : LAC30SC_09095 (LAC30SC_09095)
Accession : YP_004292857.1
Strain : Lactobacillus acidophilus 30SC
Genome accession: NC_015214
Putative virulence/resistance : Resistance
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 1772525 - 1773274 bp
Length : 750 bp
Strand : -
Note : COG1136 ABC-type antimicrobial peptide transport system, ATPase component

DNA sequence : 
ATGAATGAAATTCTTGTGGTGGACAATATCACCAAGACTTACGGGAAAAAAAGCGAAAAACAATACCAAGCTTTGAAAGG
CATCAACTTCAAGGTCACTTCAGGCGAATTCGTCGCAATCATGGGTGCTTCAGGCTCTGGTAAGACTACCTTGTTAAACA
TTCTTTCAACGCTTGATAAGCCAACTACCGGCCAAGTTTTTATCAACGGTAAAGACATCAGCAATTTAAATGCCAACCAA
ATGGCTGACTTCCGTAGTAAGGAAATTGGATTTATCTTCCAAGACTTCAACTTATTGGAAAATTTGACCAACCGTGAAAA
TATTGCGTTGCCACTCAGCTTGCGCGGTATTTCAACTAATCGCATTAATCCACTTGTGGATAAAATTGCAGCTAAGTTGG
GGATTAAAGAAATTTTGGACAAATATCCAGCTGAAATTTCTGGTGGTCAAAAGCAGCGTGTTGCTTCAGCTCGCGCACTT
GTTCACGAACCAGCCATGCTGTTAGCCGATGAACCAACCGGTGCGCTGGACTCTAAGAGTGCCCGTGAACTTTTAAATAC
AATGGAAAACTTAAACAAAAACGATGGCGTAACTACTTTGATGGTTACCCACGATCCATTTTCCGCCAGCTTTGCCAACC
GCATTTTATTTATCAAAGACGGTAAGATCGGTGAGCAAATGGTAAAGGGTAACAAGAGCAGAACTGATTTCTACCATGAA
TTAATTGCTCACTTAGGAACCGAAGAATAG

Protein sequence : 
MNEILVVDNITKTYGKKSEKQYQALKGINFKVTSGEFVAIMGASGSGKTTLLNILSTLDKPTTGQVFINGKDISNLNANQ
MADFRSKEIGFIFQDFNLLENLTNRENIALPLSLRGISTNRINPLVDKIAAKLGIKEILDKYPAEISGGQKQRVASARAL
VHEPAMLLADEPTGALDSKSARELLNTMENLNKNDGVTTLMVTHDPFSASFANRILFIKDGKIGEQMVKGNKSRTDFYHE
LIAHLGTEE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-34 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LAC30SC_09095 YP_004292857.1 ABC transporter ATP-binding protein CP001581.1.gene598.p Protein 7e-40 44
LAC30SC_09095 YP_004292857.1 ABC transporter ATP-binding protein NC_012469.1.7686878. Protein 5e-47 44
LAC30SC_09095 YP_004292857.1 ABC transporter ATP-binding protein CP001581.1.gene798.p Protein 6e-39 43
LAC30SC_09095 YP_004292857.1 ABC transporter ATP-binding protein NC_008702.1.4606598. Protein 8e-37 43