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Name : NAL212_2140 (NAL212_2140) Accession : YP_004295134.1 Strain : Nitrosomonas sp. AL212 Genome accession: NC_015222 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : - Position : 2113531 - 2117604 bp Length : 4074 bp Strand : - Note : KEGG: nmu:Nmul_A0759 DNA-directed RNA polymerase subunit beta; TIGRFAM: DNA-directed RNA polymerase, beta subunit, bacterial-type; PFAM: DNA-directed RNA polymerase, subunit 2, domain 6; RNA polymerase Rpb2, domain 2; RNA polymerase Rpb2, domain 3; RNA po DNA sequence : ATGAGCTATTCGTTCACAGAGAAAAAACGTATTCGAAAAAGTTTTGCCAAGCGTGCAAGTGTTTTATCAATTCCTTTTCT ACTTGCAACTCAGATAGAATCCTACGCGGCTTTTCTGCAGGAAAATATCGCACCTAGTAAACGTCGGACTCAAGGATTAC AGGCTGCTTTTAATTCAATTTTTCCAATTGAGAGTCATACCAAAAATGCACGCTTAGATTTTATAAGCTATGAGCTTGGT TCGCCAGTATTTGATGTAAAAGAGTGTCAGCAACGAGGATTAACTTATGCATCGCCCTTGCGTGCAAGAGTAAGACTGAC AATTATGGATAAGGAAATATCCAAGCCAACTGTTAAAGAAGTCAAAGAGCAGGAAGTTTACATGGGTGAAATTCCTTTGA TGACGGAGACAGGATCTTTTGTTATTAATGGGACTGAGCGTGTGGTTGTTTCTCAATTGCATCGTTCTCCAGGGGTATTT TTTGAACATGATCGTGGAAAAACTCATTCTTCAGGAAAATTGCTATTTTCTGCACGGATTATTCCATATCGTGGATCATG GTTAGATTTTGAGTTTGATCCAAAAGATTGTTTGTATTTTAGAATAGATCGTCGCCGTAAAATGCCTGTAACTACGTTGT TGAAGGCAATTGGTTGTACTTCTGAGCAAATATTGAAAGAGTTCTTTATTTTCGATTGCTTTCATTTTTCAGACAAAGGA ATACGGTTTGAGCTCGTGCCGGATCGCTTGCGTGGAGAAGTAGCAAGTTTCGATATTTTTGCCAAAGGCAAAAAAATAAT TGTTCAGAAAGATAAGCGGATTACAGCTAAGCATATTCGAGAAATGCAAGAAGCTAAAATTGATCAATTAGAAGTTCCTG AAGATTTTTTATTGGGAAGAATATTGGCGCAAAATATAGTCGACCCAGATACCGGTGAAATTATAGCGCTTGCTAATGAT GAAATCAGTGAAGAAACGATAGCAAAGTTTCGCATAGGAAATGTAAAGAAAATTAATACACTATATGTTAATGATCTTAA TCATGGTGCCTATATTTCTCAGACGTTAAAAATTGATGAAACAACCGATGAAATGAATGCACAGATTGCAATCTATCGTA TGATGCGACCGGGTGAACCCCCGACAGAAGATGCGGTTAAAGCTTTATTTGCCGGGTTGTTCTACTCGCCAGAACGATAT GATTTATCCGTAGTAGGCAGGATGAAATTTAATCGTAGAGTAGGAAGAACTGAGTTGACAGGATCACCAACTCTATCGAA TGAAGATATTATTGCGGTGATCAAAATTCTGGTAGAGCTGAGAAATGGGAGAGGGGAAATAGATGATATTGATCATCTTG GAAATCGACGTGTGCGTTCAGTTGGTGAGTTGGCGGAGAATCAATTTAGATCCGGCTTGGTGCGCGTAGAACGTGCGGTC AAAGAACGCTTGAGTCAGGCGGAATCAGAAAATCTGATGCCTCATGATTTAATTAATGCAAAACCAGTGTCTGCAGCTGC TCGAGAATTCTTTGGATCCAGTCAGCTGTCGCAATTTATGGATCAAACTAATCCATTATCTGAAATAACGCATAAGCGTC GCATTTCGGCATTGGGGCCTGGAGGATTGACACGGGAAAGAGCGGGCTTTGAAGTGCGTGATGTCCATCCGACACACTAT GGTCGAGTGTGTCCAATCGAGACCCCAGAAGGGCCTAATATTGGTCTTATTAACTCACTGGCGCTATATGCACGAACCAA TGAATATGGATTTATAGAAACACCTTATAGCAGGGTTAAGAATAGTCAAGTAACTGATGAAATTGATTATTTGTCGGCAA TTGAAGAAGGCAATTTTATGATTGCTCAAGCTAATGCTGAGCTTGATCACAATCATCGATTGATCAGTGAGATTGTATCT TGCCGTTACAAAAACGAATTTGCACTGTCTTCACCTGATCGTATCGAATACGTAGATGTGGCGCCAGCACAAATTGTATC GGTGGCGGCATCCCTAATCCCGTTTTTAGAGCATGATGATGCCAATCGTGCATTAATGGGCTCAAATATGCAACGTCAAG CAGTTCCCTGCTTGCGCGCGGAGAAGCCGCTCGTAGGTACAGGAATTGAACGAGTTGTAGCAATGCATTCCGGTACTACT GTTCGGGCTAAACGAGGTGGAATAGTCGATTATGTGGATGCAGGTCGAATTGTAGTGCGTGTGCATGATATCGAAACGCA CATGGGAGAGGTTGGAGTCGATATTTATAACCTTATAAAATATACACGTTCCAATCAAAATACAAATATTAATCAGCGTC CTTTAGTTAAGGTTGGTGATAATATCAGCAAAGATGATGTTATTGCAGATGGTGCATCCACTGATATGGGTGAACTTGCG TTAGGGCAAAATATGTTGGTGGCATTTATGCCGTGGAATGGATATAACTTTGAGGATTCTATCCTGATTTCAGAACGGAT TGTGGCTGAAGATCGTTTTACTTCGATTCATATAGAAGAGCTATCAGTTGTAAGTCGTGACACCAAGTTAGGTACTGAGG AAATAACGGCTGATATCCCAAATTTATCTGAGTATCAGTTAGGGCGTCTTGATGAATCAGGTATTGTTTATATTGGTGCA GAAGTTGAAGCCGGTGATGTTCTGGTTGGCAAGGTTACACCCAAAGGTGAAACGCAATTAACACCGGAAGAGAAGTTATT GCGCGCTATTTTTGGTGAAAAAGCATCAGATGTAAAAGATACTTCGCTGCGAGTTCCATCAGGCATCTCGGGAACTGTAA TTGATGTGCAAGTATTTACTCGTGAGGGTATTGAGCGGGATAAGAGAGCTCAAAATATTATTGATGATGAACTCGATCGC TACAAAAAAGATTTGGCAGATCAGATGCGCATTGTGGAAGAAGATGCATTTTCTCGTCTTGAGCGCTTATTGATAGGTAA AGTTGCTACGGGAGGGCCAAATAAGCTGGCAAAAGGGAAAGAAATTACTGCCGAATATCTACAAAGCTTTGATCCGCATT ACTGGTTTGATATCCGTTTGATGGATGAGGACGCGAGCATACAATTAGAGCAAGTACGTGAGAGTATGGTGCAAAAACGC AAGGCATTTGATGTTGCATTTGAAGAGAAAAAGAAAAAGCTTACTCAAGGTGATGAACTGGCACCTGGCGTACAAAAGAT GGTCAAGATTTATATCGCGGTCAAAAGGCGTTTGCAGCCGGGTGACAAAATGGCAGGACGGCATGGTAATAAAGGTGTTA TTTCAAAAATTGTACCTTTGGAAGATATGCCCTATATGGCTGACGGGACGCCTGTTGATGTGGTATTACATCCCTTAGGT GTTCCTTCGCGAATGAATGTAGGTCAAATTCTTGAAGTGCATTTAGGGTGGGCAGCGAAAGGTCTCGGTAAGAAAATTGA TGGAATGCTAAAAGCACAAAGAAACATAAATGAAATTAGGGATTTTATTGATAAGATTTATAATGAAAGTGGTAAGAAAG AAAATATTTCCTCTTTGTCAGACAAAGAGATTTTATCATTGGCTGAAAATCTGATAGCGGGAGTTCCTTTTGCCACACCA GTATTTGATGGCGCAACTGAAAAAGAAATCAAAGACATGTTGGAGCTTGCAGGATTACCAAGATCGGGTCAAATTACATT ATACGATGGCCGAACAGGGGAAGCTTTTGATCGATCGGTTACTGTTGGGTATATGCATGTTCTGAAGCTTCATCATTTGG TGGACGATAAAATGCATGCGCGTTCAACAGGTCCTTATAGTTTAGTAACACAGCAACCATTAGGTGGTAAAGCACAGTTT GGTGGACAGCGCTTTGGTGAGATGGAAGTCTGGGCATTGGAAGCATATGGAGCTGCATATACCTTGCAGGAAATGTTAAC TGTCAAATCGGACGATGTCACAGGGCGCACTAAAGTTTATGAAAGTATTGTTAAGGGCGATCATAAAATTGATGCTGGAA TGCCGGAGTCATTCAATGTATTGGTAAAAGAAATACGTTCACTGGGTATGGATATCGATTTGGAACAACATTAA Protein sequence : MSYSFTEKKRIRKSFAKRASVLSIPFLLATQIESYAAFLQENIAPSKRRTQGLQAAFNSIFPIESHTKNARLDFISYELG SPVFDVKECQQRGLTYASPLRARVRLTIMDKEISKPTVKEVKEQEVYMGEIPLMTETGSFVINGTERVVVSQLHRSPGVF FEHDRGKTHSSGKLLFSARIIPYRGSWLDFEFDPKDCLYFRIDRRRKMPVTTLLKAIGCTSEQILKEFFIFDCFHFSDKG IRFELVPDRLRGEVASFDIFAKGKKIIVQKDKRITAKHIREMQEAKIDQLEVPEDFLLGRILAQNIVDPDTGEIIALAND EISEETIAKFRIGNVKKINTLYVNDLNHGAYISQTLKIDETTDEMNAQIAIYRMMRPGEPPTEDAVKALFAGLFYSPERY DLSVVGRMKFNRRVGRTELTGSPTLSNEDIIAVIKILVELRNGRGEIDDIDHLGNRRVRSVGELAENQFRSGLVRVERAV KERLSQAESENLMPHDLINAKPVSAAAREFFGSSQLSQFMDQTNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHY GRVCPIETPEGPNIGLINSLALYARTNEYGFIETPYSRVKNSQVTDEIDYLSAIEEGNFMIAQANAELDHNHRLISEIVS CRYKNEFALSSPDRIEYVDVAPAQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRAEKPLVGTGIERVVAMHSGTT VRAKRGGIVDYVDAGRIVVRVHDIETHMGEVGVDIYNLIKYTRSNQNTNINQRPLVKVGDNISKDDVIADGASTDMGELA LGQNMLVAFMPWNGYNFEDSILISERIVAEDRFTSIHIEELSVVSRDTKLGTEEITADIPNLSEYQLGRLDESGIVYIGA EVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGISGTVIDVQVFTREGIERDKRAQNIIDDELDR YKKDLADQMRIVEEDAFSRLERLLIGKVATGGPNKLAKGKEITAEYLQSFDPHYWFDIRLMDEDASIQLEQVRESMVQKR KAFDVAFEEKKKKLTQGDELAPGVQKMVKIYIAVKRRLQPGDKMAGRHGNKGVISKIVPLEDMPYMADGTPVDVVLHPLG VPSRMNVGQILEVHLGWAAKGLGKKIDGMLKAQRNINEIRDFIDKIYNESGKKENISSLSDKEILSLAENLIAGVPFATP VFDGATEKEIKDMLELAGLPRSGQITLYDGRTGEAFDRSVTVGYMHVLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQF GGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVTGRTKVYESIVKGDHKIDAGMPESFNVLVKEIRSLGMDIDLEQH |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 65 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 65 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| NAL212_2140 | YP_004295134.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 77 |
| NAL212_2140 | YP_004295134.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 75 |
| NAL212_2140 | YP_004295134.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 73 |
| NAL212_2140 | YP_004295134.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 69 |
| NAL212_2140 | YP_004295134.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 68 |
| NAL212_2140 | YP_004295134.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 66 |
| NAL212_2140 | YP_004295134.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 66 |
| NAL212_2140 | YP_004295134.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 66 |
| NAL212_2140 | YP_004295134.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 66 |
| NAL212_2140 | YP_004295134.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 66 |
| NAL212_2140 | YP_004295134.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 66 |
| NAL212_2140 | YP_004295134.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 65 |
| NAL212_2140 | YP_004295134.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 65 |
| NAL212_2140 | YP_004295134.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 65 |
| NAL212_2140 | YP_004295134.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 65 |
| NAL212_2140 | YP_004295134.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 65 |
| NAL212_2140 | YP_004295134.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 65 |
| NAL212_2140 | YP_004295134.1 | DNA-directed RNA polymerase subunit beta | CP003583.1.gene2745. | Protein | 0.0 | 46 |
| NAL212_2140 | YP_004295134.1 | DNA-directed RNA polymerase subunit beta | AE016830.1.gene3155. | Protein | 0.0 | 45 |
