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Name : Marme_1553 (Marme_1553) Accession : YP_004312654.1 Strain : Marinomonas mediterranea MMB-1 Genome accession: NC_015276 Putative virulence/resistance : Unknown Product : protein-export membrane protein SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 1728485 - 1730338 bp Length : 1854 bp Strand : + Note : KEGG: mmw:Mmwyl1_2645 preprotein translocase subunit SecD; TIGRFAM: SecD export membrane protein; SecD/SecF/SecDF export membrane protein, bacteria; PFAM: Preprotein translocase, SecD/SecF/SecDF; SecD/SecF/SecDF export membrane protein, GG motif, N-termin DNA sequence : ATGCTCAACAAGTATCCCTTGTGGAAGTACCTGCTCATCTTGGCCGTATTGGTGTTTGGCGTAGTTTACGCATTGCCCAA TTTATATCCAGATGATCCAGCCCTACAAATTTCGACCCAAAAAGCGACCAGCACAGTAGATGAGCGAACGTTAAAAACAG CACGAAATGCGCTTGATAAAGCTGGAATAGAATTAAAAGCAGCAGAATTGACCTCTGCTGGTGGTACCTTGCGTTTCGAT AACGGTGAGGACCAATTGGCAGCGAAGCCAGTTATAGCTGCAGCATTAGGTGATGGTTATGTCACCGCGCTAAATTTGGT GCCAACAACGCCGGATTGGTTAGCGTCACTCGGTGCAGGTCCCGCTAAACTAGGTTTGGACCTTCGCGGTGGTGTGCATT TCTTATTGGAAGTGGATACTCCGGCAGCGCTTAAGCAACGTTTAGAGGTTGCTGGTAGTGAAATGAAGGCTGCACTTCGA AAAGAACGTATCCGTTATCGCAGTGTTGAAATCAAAGATGGTGTGATGTCGATTCGTTTCCTAAAAGATTCTGATCGTGA TTTAGCTGAGTCACTGTTAAAAGATGATTTTGGCGATTATCTATACCGTACTGTGGAAGACGGAAAAAGCTTCTTCTTGA CGATCGGCTTTAGTGAGGCCGAACAGAAAGAAATCGAAGCGTATGCATTAGAGCAGAACTTAACGACACTTCGTAACCGA GTTAACGAACTTGGTGTGGCGGAACCGTTAGTGCAGCGTCAAGGTAGTAATCGTATTGTTGTAGAGCTTCCTGGTGTGCA GGATACAGCGGCAGCGAAACGTATTATCGGTGCAACGGCAAACCTAGAGTTTCGTTTAGAAGCGGGTCTAGACGCAAATG CTTCTGATACCGAAACGCTAACCTTCCGTAATGGCAGTGGTCGTACCGCGCAATTAGAGAAAGACATCATCATAACAGGT GACAGTGTCTCAGATGCGAACTCCTCATTTGATGAGAATGGACGTCCGCAGGTAAACATCAGCCTAGACTCAAAAGGCGG CAAACAGATGGCGAAAGTAACGCGATCTGCTGTTGGCCGAAATATGGCGGTTGTGTTTATTGAGCATAAAAGTCGTTCTC GCTTTGTAGAACAAGAAGACGGCTCGTTAAAAGAAGTGCGTCGTAGTTACAGTGAAAAAGGCATTATTTCATTGGCCACG ATTCAAACGACCTTGGGTAACTCTTTCCGTATTACCGGTCTAGACAGCCCTCGTGAATCATCAGAATTGGCTTTGCTACT TCGCGCAGGTGCATTGGCTGCGCCAATCTACTTTGTCGAAGAACGCACAATTGGTCCAAGCTTAGGTGCTGAAAACATAA AATTGGGTGTGACCTCTGCTCAGATTGGTATGTTGGTTGTGATGTTATTCATGCTGATTTACTACAAAGTATTCGGTGTG TTTGCGAATGTGTCTTTGATTCTGAACATCGTATTGTTGATGGCTTTCATGTCTTTAATGTCCGCAACCTTAACCTTGCC AGGTATAGCCGGGATCGTATTGACAATGGGTATGGCGGTCGACGCAAACGTACTCATATTCTCGCGGATTAAAGAAGAGC TTGCGAACGGTTTGCCGAGTCAGCAGGCCATTCATTCAGGCTTTAACCGAGCGTTTACGACAATATTTGATGCTAATATC ACGACATTGCTGGTTGCTGTTATCCTGTTTGCTGTGGGTACAGGGCCGGTAAAAGGGTTTGCCGTGACGCTATCATTGGG TATTTTGACCTCAATGTTTACAGCGATTGTGGTAACGAGAGCACAAGTTAACCTTGTTTATGGCGGCCGCAAAAACAAGC GCTTGTACATTTAG Protein sequence : MLNKYPLWKYLLILAVLVFGVVYALPNLYPDDPALQISTQKATSTVDERTLKTARNALDKAGIELKAAELTSAGGTLRFD NGEDQLAAKPVIAAALGDGYVTALNLVPTTPDWLASLGAGPAKLGLDLRGGVHFLLEVDTPAALKQRLEVAGSEMKAALR KERIRYRSVEIKDGVMSIRFLKDSDRDLAESLLKDDFGDYLYRTVEDGKSFFLTIGFSEAEQKEIEAYALEQNLTTLRNR VNELGVAEPLVQRQGSNRIVVELPGVQDTAAAKRIIGATANLEFRLEAGLDANASDTETLTFRNGSGRTAQLEKDIIITG DSVSDANSSFDENGRPQVNISLDSKGGKQMAKVTRSAVGRNMAVVFIEHKSRSRFVEQEDGSLKEVRRSYSEKGIISLAT IQTTLGNSFRITGLDSPRESSELALLLRAGALAAPIYFVEERTIGPSLGAENIKLGVTSAQIGMLVVMLFMLIYYKVFGV FANVSLILNIVLLMAFMSLMSATLTLPGIAGIVLTMGMAVDANVLIFSRIKEELANGLPSQQAIHSGFNRAFTTIFDANI TTLLVAVILFAVGTGPVKGFAVTLSLGILTSMFTAIVVTRAQVNLVYGGRKNKRLYI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 2e-166 | 61 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 5e-167 | 61 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 5e-167 | 61 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 5e-167 | 61 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 6e-167 | 60 |
