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Name : rpoB (HMPREF9137_0902) Accession : YP_004328612.1 Strain : Prevotella denticola F0289 Genome accession: NC_015311 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : 2.7.7.6 Position : 1070619 - 1074428 bp Length : 3810 bp Strand : + Note : identified by match to protein family HMM PF00562; match to protein family HMM PF04560; match to protein family HMM PF04561; match to protein family HMM PF04563; match to protein family HMM PF04565; match to protein family HMM TIGR02013 DNA sequence : ATGGCATTAGAAAACAAACCCAGAATAAATTTCGCCAGCGTTAAGAATCCGTATCCCTATCCGGATTTCCTCGATGTGCA ACTGAAGTCTTTCCGTGACTTCCTGCAGCTGGACACTCCGCCTGAGGAACGCAAGAATGACGGTTTGTATAAGGTGTTCG CAGAGAACTTCCCTATCACCGACACGCGTAATAATTTCGTCCTTGAGTTCCTGGATTACTATGTTGACCCCCCGAGATAC TCCATAGAGGAGTGTCTGGAGCGTGGCCTGACCTATAGCGTACCCTTGAAGGCCAAGATGAAGCTGTATTGTACGGATCC GGACCATGAGGACTTCGGTACGTTTATTCAGGATGTGTTCCTGGGTACAATTCCTTACATGACGAGCAACGGTACTTTCG TGATCAACGGTGCCGAGCGTGTCGTCGTTTCCCAGCTGCACCGTTCTCCGGGTGTTTTCTTCGGACAGGGTGTCCATGCC AACGGTACCGTTCTTTACAGTGCTCGTATTATTCCGTTCAAGGGTTCATGGATCGAGTTCGCTACCGACATCAACAATGT CATGTATGCTTACATCGACCGCAAGAAGAAGCTGCCCGTCACCACCATGCTCCGTGCCATCGGCTACGAGACCGACCGTG ACATTCTCCAGATTTTCGATCTCTGCGAGGAGGTGAAAGTCAACAAGAAGAACATGAAAGCTGCCATCGGCCGCAAGATT GCGGGTAACGTGATGAAGACCTGGACGGAGGATTTCGTGGATGAGGATACCGGCGAGGTGGTTTCCATTGAGCGCAACGA GGTGGTTGTAGAACGTGAGACCGTCATTGCGGAAGAGAACGTAGATGAGATTCTCGACAGTTCTGTATCAACCATTCTGC TCCATAAAGATGAGGAGGCCGCCAACAAGTATTCCATCATCTTCAATACGCTTGCCAAAGACCCGAGCCATTCGGAGATG GAGGCTGTGAACTATATCTACCGTCAGCTGCGCAATGCGGATGCTGCCGATGACGCCAGTGCCCGGGAGGTATTCCAGAA CCTTTTCTTCTCCGACAAACGGTATGACCTGGGCGAGGTGGGACGTTACCGTATCAACAAGAAGCTGAATCTGGATACAG ACATGGATGTCCGTGTGCTGACAAAGGATGACATCATTGAAATCATCAAATATCTCATCAGCCTGATCAACTCAAATGCC ACGGTTGATGATATTGACCACCTGTCAAACCGCCGTGTCCGTACTGTAGGCGAGCAGCTGGCCAACCAGTTCTCCATCGG GCTGGCACGCATGAACCGTACTATCCGCGAACGCATGAACGTCCGTGACAGTGAGGTGTTCCAGCCGACGGACCTGATTA ATGCAAAGACCATTTCAAGCGTCATCAACTCGTTCTTCGGTACCAATCCGCTGAGCCAGTTCATGGACCAGACGAACCCG CTGGCTGAGGTCACCCACAAGCGTCGTCTTTCCGCCCTGGGTCCCGGTGGTCTGTCGCGTGAACGTGCCGGATTCGAGGT GCGTGACGTCCACTATACCCACTATGGCCGTCTGTGCCCGATCGAGTCTCCTGAAGGTCCTAACATCGGACTGATCTCTT CTCTCTGTATGTATGCCAAGATCAACGACCTCGGCTTCATCGTGACCCCTTACCGCCGTGTGAAGGATTCCAAGGTGGAC ATGGACAACAAGGATGTCGTTTTCCTGACAGCGGAAGAGGAGGAAGACCAGATTATCGGACAGGGCAATGCGCCGTTGAA CGATGACGGTACGTTCATCCGTGAAACGGTCAAGTGCCGTCAGGATGCTGATTATCCGGTTGTCGGGCCAGATTCGGTCA ACCTTATTGATGTGTCTCCGCAACAGATTGCTTCTGTGTCGGCAGGTTTGATTCCTTTCCTGGAGCATGACGACGGTCAC CGTGCGCTGATGGGTTGTAACATGATGCGTCAGGCGGTGCCGTTGCTTCATAATGATGCGCCGATTGTCGGTACGGGCCT TGAGAAGCAGGTCTGTGAGGACTCACGTACGATGGTTACTGCCGAAGGAGACGGTATTATAGAATATGTAGATGCCACGA CCATCCGCATCCTCTACGACCGTACGGAAGAGGAGGAGTTCGTCAGCTTCGAACCGGCGTTGAAGGAGTACCGTATTCCT AAGTTCCGCCGCACCAACCAGAACATGGTTGTCGACCTCCGTCCGATCTGCGACAAGGGGCAGCGTGTGAAGAAGGGTGA CATCCTTACCGAGGGCTATGCTACAGAGAATGGTGAGCTGGCACTTGGCCGCAACCTGCTGGTTGCTTATATGCCTTGGA AGGGCTACAACTATGAGGATGCCGTTGTCATTTCAGAGCGCATGGTGCGTGAGGACGTGCTGACTTCTGTCCATGTTGAC GAGTATTCGCTTGAAGTGCGCGAGACGAAGCGTGGCGTAGAGGAGTTTACGTCGGACATCCCGAATGTCAGCGAAGAGGC GACAAAGGACCTCGACGATAACGGTATCATCCGTGTCGGTGCTCGTGTGGAGCCCGGCGACATCATGATCGGTAAGATTT CGCCGAAGGGTGAGAGCGATCCGTCACCGGAGGAGAAGCTTCTCCGTGCCATTTTTGGCGACAAGGCCGGCGATGTGAAG GATTCATCCCTGAAAGCCAATCCGTCACTGAGCGGTGTCGTCATAGACAAGAAACTCTTCAGCCGTGCCATCAAGACACG TGAGAGCAAGCGTCAGGACAAGGTGACACTTGCCAAGATCGACGAGGAGCAGGAAGCAAAGGTCAACGACTTGAAGGATC TTCTGGTCGACAAGCTGCTCGAACTGACGGCTGATAAGGTGTCGGAGGGTGTCAAGGACTATTCTGATGCAGAGATTATC ACCAAGGGCAGCAAGTTCACCGTTGCCGCATTGAAGAATCTCGACTACGAGGGAATCCAGTCCAATGGCTGGACAGACGA TGAGCATACCAACCTGTTGATTCAGAAGCTGATCATGAATTACATCCGCAAGTACAAGCAGATGGATGCAGAGCTGAAGC GCAGGAAGTTCGCTATCACCATCGGCGATGAACTTCCGTCGGGTGTGCTTCAGATGGCGAAGGTATACATCGCCAAGAAA CGTAAGATCCAGGTCGGTGACAAACTTGCTGGCCGTCATGGCAACAAGGGTATCGTATCGAAGGTCGTACGTACAGAGGA TATGCCGTTCCTCGAGGACGGAAGTCCGGTCGACCTGGTGCTGAACCCGATGGGTGTGCCTTCACGTATGAACCTCGGTC AGATCTTCGAGGCGATTCTCGGTGCGGCAGGCCGTAAGTTAGGGGTGAAGTTCGCCACGCCGATTTTCGACGGTGCCAAA CTCTCCGATCTGAAGGAATGGACGGACAAAGCGGGGCTGCCCAATCTCTGCTCGACATACATCTATGATGGTGAGACAGG CGAGAAGTTCGACCAGCCGGCCACGGTGGGTATCACTTACTTCCTGAAGCTCGGTCATATGGTCGAGGACAAGATGCACG CCCGCAGCATCGGCCCTTACTCACTGATCACCCAGCAGCCACTCGGCGGCAAGGCACAGTTCGGCGGTCAGCGTTTCGGA GAGATGGAGGTATGGGCCATCGAGGCATTCGGTGCATCCCATGTCCTTCAGGAAATCCTTACGATCAAGTCTGATGATGT TGTGGGTCGTTCAAAGGCTTATGAAGCTATCGTCAAGGGCGAGCCGATGCCGACACCTGGCATTCCAGAGTCGCTGAACG TACTGTTGCACGAGTTGCGCGGCCTCGGTCTGAGCATCAAACTTGATTAA Protein sequence : MALENKPRINFASVKNPYPYPDFLDVQLKSFRDFLQLDTPPEERKNDGLYKVFAENFPITDTRNNFVLEFLDYYVDPPRY SIEECLERGLTYSVPLKAKMKLYCTDPDHEDFGTFIQDVFLGTIPYMTSNGTFVINGAERVVVSQLHRSPGVFFGQGVHA NGTVLYSARIIPFKGSWIEFATDINNVMYAYIDRKKKLPVTTMLRAIGYETDRDILQIFDLCEEVKVNKKNMKAAIGRKI AGNVMKTWTEDFVDEDTGEVVSIERNEVVVERETVIAEENVDEILDSSVSTILLHKDEEAANKYSIIFNTLAKDPSHSEM EAVNYIYRQLRNADAADDASAREVFQNLFFSDKRYDLGEVGRYRINKKLNLDTDMDVRVLTKDDIIEIIKYLISLINSNA TVDDIDHLSNRRVRTVGEQLANQFSIGLARMNRTIRERMNVRDSEVFQPTDLINAKTISSVINSFFGTNPLSQFMDQTNP LAEVTHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIESPEGPNIGLISSLCMYAKINDLGFIVTPYRRVKDSKVD MDNKDVVFLTAEEEEDQIIGQGNAPLNDDGTFIRETVKCRQDADYPVVGPDSVNLIDVSPQQIASVSAGLIPFLEHDDGH RALMGCNMMRQAVPLLHNDAPIVGTGLEKQVCEDSRTMVTAEGDGIIEYVDATTIRILYDRTEEEEFVSFEPALKEYRIP KFRRTNQNMVVDLRPICDKGQRVKKGDILTEGYATENGELALGRNLLVAYMPWKGYNYEDAVVISERMVREDVLTSVHVD EYSLEVRETKRGVEEFTSDIPNVSEEATKDLDDNGIIRVGARVEPGDIMIGKISPKGESDPSPEEKLLRAIFGDKAGDVK DSSLKANPSLSGVVIDKKLFSRAIKTRESKRQDKVTLAKIDEEQEAKVNDLKDLLVDKLLELTADKVSEGVKDYSDAEII TKGSKFTVAALKNLDYEGIQSNGWTDDEHTNLLIQKLIMNYIRKYKQMDAELKRRKFAITIGDELPSGVLQMAKVYIAKK RKIQVGDKLAGRHGNKGIVSKVVRTEDMPFLEDGSPVDLVLNPMGVPSRMNLGQIFEAILGAAGRKLGVKFATPIFDGAK LSDLKEWTDKAGLPNLCSTYIYDGETGEKFDQPATVGITYFLKLGHMVEDKMHARSIGPYSLITQQPLGGKAQFGGQRFG EMEVWAIEAFGASHVLQEILTIKSDDVVGRSKAYEAIVKGEPMPTPGIPESLNVLLHELRGLGLSIKLD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 43 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | YP_004328612.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 47 |
| rpoB | YP_004328612.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 46 |
| rpoB | YP_004328612.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 44 |
| rpoB | YP_004328612.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 43 |
| rpoB | YP_004328612.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 43 |
| rpoB | YP_004328612.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 43 |
| rpoB | YP_004328612.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 43 |
| rpoB | YP_004328612.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 43 |
| rpoB | YP_004328612.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 43 |
| rpoB | YP_004328612.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 41 |
