Gene Information

Name : Psed_2082 (Psed_2082)
Accession : YP_004332160.1
Strain : Pseudonocardia dioxanivorans CB1190
Genome accession: NC_015312
Putative virulence/resistance : Virulence
Product : microcompartments protein
Function : -
COG functional category : Q : Secondary metabolites biosynthesis, transport and catabolism
COG ID : COG4577
EC number : -
Position : 2216340 - 2216633 bp
Length : 294 bp
Strand : +
Note : KEGG: nml:Namu_2338 microcompartments protein; PFAM: Microcompartment protein, bacteria; SMART: Microcompartment protein, bacteria

DNA sequence : 
ATGGCGGGCAGCGGTGCGCTCGGGATGATCGAGACGCGGGGGCTGGTGGGCGCGATCGAGGCCGCGGACGCGATGGTGAA
GGCCGCGAACGTCGAGGTCGAGGGCTATCGCACGCTGCGCAACGGGCAGGTGTCGGTGCTCGTGCGCGGCGACGTCGGCG
CGGTGAAGGCGGCCGTCGACGCCGGTGCCGCCGCGGCCGCCCGCGTCGGTGAGCTCTACACCTCGCACGTGATCCCGCGC
CCGCACGGGGAGACCGAGGGCGTGGTCGGCCAGGCGGTCGTCCCGCTCGACTGA

Protein sequence : 
MAGSGALGMIETRGLVGAIEAADAMVKAANVEVEGYRTLRNGQVSVLVRGDVGAVKAAVDAGAAAAARVGELYTSHVIPR
PHGETEGVVGQAVVPLD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42077.1 hypothetical protein Not tested PAI II 536 Protein 9e-09 61
unnamed CAD42078.1 hypothetical protein Not tested PAI II 536 Protein 3e-08 58
unnamed CAD42079.1 hypothetical protein Not tested PAI II 536 Protein 5e-08 56

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Psed_2082 YP_004332160.1 microcompartments protein VFG1596 Protein 3e-09 61
Psed_2082 YP_004332160.1 microcompartments protein VFG1597 Protein 1e-08 58
Psed_2082 YP_004332160.1 microcompartments protein VFG1598 Protein 2e-08 56