Gene Information

Name : Psed_2089 (Psed_2089)
Accession : YP_004332167.1
Strain : Pseudonocardia dioxanivorans CB1190
Genome accession: NC_015312
Putative virulence/resistance : Virulence
Product : microcompartments protein
Function : -
COG functional category : Q : Secondary metabolites biosynthesis, transport and catabolism
COG ID : COG4577
EC number : -
Position : 2224125 - 2224454 bp
Length : 330 bp
Strand : -
Note : KEGG: nml:Namu_2345 microcompartments protein; PFAM: Microcompartment protein, bacteria; SMART: Microcompartment protein, bacteria

DNA sequence : 
ATGGCGACCACCGCCGCGGGAACCCCTGCCGCACCATCGACGCCGCGCGGCGCGCTGGGCCTGATCGAGACCAAGGGCCT
GGTCGGTGCCATCGAGGCGGCCGACGCGATGGTCAAGGCCGCGAACGTGCAGATCGTCGGCCACCGCGAGATCGGCGGCG
GCCTGGTGACGGTCATGGTCCGTGGCGACGTCGGCGCGGTGAAGGCCGCCACCGACGCCGGGGCGGTGGCCGCGGGCAAG
GCGGGCGAGGTCGTGTCCGTGCACGTCATCCCGCGCCCGCACGACGAGACCGAGGGCATCCTCGCCGTCCTCACCCGCCC
GAAGGGCTGA

Protein sequence : 
MATTAAGTPAAPSTPRGALGLIETKGLVGAIEAADAMVKAANVQIVGHREIGGGLVTVMVRGDVGAVKAATDAGAVAAGK
AGEVVSVHVIPRPHDETEGILAVLTRPKG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42077.1 hypothetical protein Not tested PAI II 536 Protein 7e-11 65
unnamed CAD42079.1 hypothetical protein Not tested PAI II 536 Protein 4e-10 62
unnamed CAD42078.1 hypothetical protein Not tested PAI II 536 Protein 2e-10 62

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Psed_2089 YP_004332167.1 microcompartments protein VFG1596 Protein 3e-11 65
Psed_2089 YP_004332167.1 microcompartments protein VFG1598 Protein 2e-10 62
Psed_2089 YP_004332167.1 microcompartments protein VFG1597 Protein 9e-11 62