|
Name : Fluta_2160 (Fluta_2160) Accession : YP_004344984.1 Strain : Fluviicola taffensis DSM 16823 Genome accession: NC_015321 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : 2.7.7.6 Position : 2484289 - 2488101 bp Length : 3813 bp Strand : + Note : COGs: COG0085 DNA-directed RNA polymerase beta subunit/140 kD subunit; HAMAP: DNA-directed RNA polymerase, beta subunit, bacterial-type; InterProIPR010243:IPR007644:IPR007642:IPR007645:IPR 019462:IPR007120:IPR007641; KEGG: phe:Phep_0849 DNA-directed RNA p DNA sequence : TTGGCAACAACAAGCAATACATCAACGAGAATTAATTTTGCTTCTAGCAAAAATCAGTTCGCTTATCCAGATTTTCTGGA TATTCAGCTTAAATCCTTCCAGGAGTTTTTCCAATTGGAAACAACACCTGAAAATCGTGAAAGCGAAGGATTGTTCAAGG TATTTGCGGAAAATTTCCCAATTACTGACACACGAAATCAATTCGTGTTGGAGTTCCTTGATTATTTCATCGACCCACCC CGTTACACTATTGACGAGTGTATCGAAAGAGGTTTAACTTATAGTGTTCCACTAAAAGCTAAACTAAAATTATATTGTAC AGACCCTGAACACGAAGATTTTGAAACTATCGTGCAGGATGTATACTTAGGTACGATTCCATACATGACGCCAAAAGGTT CTTTCGTAATCAATGGTGCTGAGCGTGTTATTGTATCTCAGTTACACCGTTCTCCAGGGGTATTCTTCGGTCAAAGCCGT CACGCAAATGGTACAAAATTGTACTCTGCGCGTGTGATTCCTTTTAAAGGATCTTGGATCGAATTCGCAACGGATATTAA CAGCGTAATGTATGCTTACATCGATCGTAAGAAAAAATTACCTGTTACAACATTATTCCGTGCGATTGGATATGAAACAG ATAAAGATATTCTAGAAATATTCGGATTAGCTGACGAAGTGAAAGCTAATAAAGCTAATTTGAAAAAATGTGTTGGTAGA AGACTGGCAGCTCGTGTATTGAAGTCTTGGATTGAGGACTTTGGAGATGAAGATACAGGAGAAGTAGTATCTATCGAACG TAATGAAGTAATCCTTGACCGTGAAACAGTATTGGAAGAACACCATGTTGATTTAGTAATCGACGCTGGAGTGAAAACAG TAATTTTCCACAAAGAGGATGCTAATTCAGCTGATTATACAATTATTTACAACACGCTTCAAAAAGATACTTCAAATTCT GAAAAAGAAGCTGTTGAGCATATTTACCGTCAGTTGCGTAATGCTGAACCACCAGATTATGAAACAGCAAAAGGTGTTTT CGAGAAATTATTCTTCTCAGATGCACGTTATGATTTAGGTGAAGTAGGTCGTTATAGAATGAATAAAAAGTTGAATATCG ATAACTCGGAAGAGTCTCGCGTTTTAACTAAAAATGATATCCTTTCGATTATTAAGTATTTGATTGAACTAATCAACTCG AAAGCGGATGTGGATGACATTGACCACTTGTCAAATCGTCGTGTTCGTACAGTTGGGGAACAATTATATGCTCAATTTGG TGTTGGTTTGGCTCGTATGGCTCGTACTATTCGTGAACGTATGAACGTTCGTGACAACGAGGTCTTTACTCCAATCGATT TGATTAACGCGAAAACCTTGTCTTCCGTTATCAATTCGTTCTTCGGAACTAACCAGTTGTCTCAATTTATGGATCAGACC AACCCGCTTTCTGAGGTAACTCACAAGCGTCGTTTGTCTGCATTAGGACCAGGTGGACTTTCTCGTGAAAGAGCAGGTTT TGAGGTACGTGACGTTCACTACACGCACTACGGTCGTTTGTGTACGATTGAAACGCCAGAGGGACCAAACATTGGTTTGA TCTCATCTCTATGTGTATTTGCGAAAGTAAATAAACTAGGATTTATCGAAACTCCTTACCGTTCGGTATCGAATGGTAAA GTAGATACAACTTCTGAGCCTATTTATTTATCTGCTGAAGAAGAAGATGAAAAAATGATTGCTCAAGCAAATGCAATTGT GGATGAAAAAGGAAATTTCCTTTCAAATGTAGTGAAAGCTCGTTTCGAAGGTGACTTCCCGGTTGTTCAACCAAAAGATT TGCATTTAATGGATGTTGGTGCTAACCAGATTGCTTCGATTGCAGCATCTTCGATTCCTTTCTTGGAGCATGATGATGCC AACCGTGCCTTGATGGGATCCAACATGCAGCGTCAAGCTGTTCCATTGTTGAAACCACAATCTCCAGTAGTTGGTACTGG AATTGAGCAATTGGTTGCGCGTGATTCTCGTGTGTTAATTAATGCTGAAGGTCCTGGAACAGTTGAATATGTTGATGCAA ATGAAATCGTGATTCGTTACGACTGGTCTGCTGATGACAAATTGGTAAGTTTTGATAGCGAAGTTATTCGTTATTCTTTA ACGAAATTCCAAAAAACAAACCAGAGTACAACGATAAACTTGAAGCCAATTGTACGCAAAGGTGACCGTATTGATTTCGG TCAGGTTCTTTGTGAAGGTTATGCTACGCAAGGTGGAGAGTTGGCTTTAGGTCAAAACTTGAAAGTTGCCTTTATGCCTT GGAAAGGGTATAACTTCGAGGATGCAATTGTGATTTCTGAGCGTGTTGTACGTGATGATATTTTCACATCCATTCATATC GATGAATATTCATTAGATGTTCGTGATACGAAACGTGGAATGGAAGAATTAACTTCTGATATTCCGAATGTTTCTGAAGA AGCAACAAAAGATTTGGATGAAAATGGTTTGATTCGTATTGGAGCTGAAATTAAAGAAGGTGATATCCTAATTGGAAAAA TTACTCCAAAAGGTGAAACTGATCCATCTCCAGAAGAGAAATTATTGCGTGCAATCTTTGGTGACAAAGCAGGTGATGTA AAAGACGCTTCTTTAAAAGCTGGTCCGTCATTACGTGGAGTTGTTATCCAGAAAAAATTGTTCTCTCGTGCAATCAAGGA TCGTAAATCAAAAGCTCAGGACAAACCAGTTTTGGAAGTTTTGGATACTGAATACGATAGAGATTATGCTGATTTGAAAG AAAAATTAGCAGATAAATTGATGACCATCTTAGGTGAAACAAAATCTGCTGGAGTTTTTAATAATTTCAAAGAAGAAATC ATTAAAAAAGGTACGAAGTTTACGCATAAAAATTTGTTGGTGATTGATTATACAATCGTTAATCCTACAAGTTGGACTGC AGAAGCGCATATCAATGCTTTGATTAGTCGTTTGTTGCATAACTTTACGATTAAAGCAAATGATTTGTTGGGAATCTACA AACGTAAGAAATTCCATATTTCAGTTGGAGATGAACTTCCTGCAGGAATCGTTAAAATGGCGAAAGTTTATGTTGCTCAG AAACGTAAGTTGAAAGTAGGTGATAAAATGGCTGGACGTCATGGTAACAAAGGTATTGTTGCAAATATCGTTCGTGCTGA AGACATGCCATTCTTGGAAGACGGAACACCAGTAGATATCGTATTGAATCCATTGGGGGTACCTTCTCGTATGAACTTAG GTCAGATTTATGAAACTGTACTTGGTTGGGCTGGTCAAAAATTAGGAGTGAAATTCGCTACACCAATTTTTGATGGTGCT AAACCAGAAGAAATCAACGAATGGACAGACAAAGCAGGTGTTCCACGTTCAGGTAAAACTTACTTGTACGATGGAGGAAC GGGAGATCGTTTCCACCAACCAGCAACAGTTGGTATCATTTACATGTTGAAATTATCTCACATGGTTGATGATAAAATGC ATGCTCGTTCAATCGGACCATACTCATTAATTACACAACAACCATTGGGTGGTAAAGCTCAATTCGGAGGTCAGCGTTTT GGTGAGATGGAGGTTTGGGCATTGGAAGCATTTGGTGCAGCTAATATCCTACAAGAAATCTTGACAGTTAAATCCGATGA CGTGATGGGACGTGCGAAAGCATACGAAGCGATCGTTAAAGGGGATAACATTCCAGAGCCAGGAATTCCAGAATCATTCA ACGTATTGTTGCATGAATTAAGAGGTCTTGGATTGAATGTGTCAATGGATTAA Protein sequence : MATTSNTSTRINFASSKNQFAYPDFLDIQLKSFQEFFQLETTPENRESEGLFKVFAENFPITDTRNQFVLEFLDYFIDPP RYTIDECIERGLTYSVPLKAKLKLYCTDPEHEDFETIVQDVYLGTIPYMTPKGSFVINGAERVIVSQLHRSPGVFFGQSR HANGTKLYSARVIPFKGSWIEFATDINSVMYAYIDRKKKLPVTTLFRAIGYETDKDILEIFGLADEVKANKANLKKCVGR RLAARVLKSWIEDFGDEDTGEVVSIERNEVILDRETVLEEHHVDLVIDAGVKTVIFHKEDANSADYTIIYNTLQKDTSNS EKEAVEHIYRQLRNAEPPDYETAKGVFEKLFFSDARYDLGEVGRYRMNKKLNIDNSEESRVLTKNDILSIIKYLIELINS KADVDDIDHLSNRRVRTVGEQLYAQFGVGLARMARTIRERMNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQT NPLSEVTHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCTIETPEGPNIGLISSLCVFAKVNKLGFIETPYRSVSNGK VDTTSEPIYLSAEEEDEKMIAQANAIVDEKGNFLSNVVKARFEGDFPVVQPKDLHLMDVGANQIASIAASSIPFLEHDDA NRALMGSNMQRQAVPLLKPQSPVVGTGIEQLVARDSRVLINAEGPGTVEYVDANEIVIRYDWSADDKLVSFDSEVIRYSL TKFQKTNQSTTINLKPIVRKGDRIDFGQVLCEGYATQGGELALGQNLKVAFMPWKGYNFEDAIVISERVVRDDIFTSIHI DEYSLDVRDTKRGMEELTSDIPNVSEEATKDLDENGLIRIGAEIKEGDILIGKITPKGETDPSPEEKLLRAIFGDKAGDV KDASLKAGPSLRGVVIQKKLFSRAIKDRKSKAQDKPVLEVLDTEYDRDYADLKEKLADKLMTILGETKSAGVFNNFKEEI IKKGTKFTHKNLLVIDYTIVNPTSWTAEAHINALISRLLHNFTIKANDLLGIYKRKKFHISVGDELPAGIVKMAKVYVAQ KRKLKVGDKMAGRHGNKGIVANIVRAEDMPFLEDGTPVDIVLNPLGVPSRMNLGQIYETVLGWAGQKLGVKFATPIFDGA KPEEINEWTDKAGVPRSGKTYLYDGGTGDRFHQPATVGIIYMLKLSHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRF GEMEVWALEAFGAANILQEILTVKSDDVMGRAKAYEAIVKGDNIPEPGIPESFNVLLHELRGLGLNVSMD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 46 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 46 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Fluta_2160 | YP_004344984.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 46 |
| Fluta_2160 | YP_004344984.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 46 |
| Fluta_2160 | YP_004344984.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 46 |
| Fluta_2160 | YP_004344984.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 46 |
| Fluta_2160 | YP_004344984.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 46 |
| Fluta_2160 | YP_004344984.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 46 |
| Fluta_2160 | YP_004344984.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 46 |
| Fluta_2160 | YP_004344984.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 46 |
| Fluta_2160 | YP_004344984.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 46 |
| Fluta_2160 | YP_004344984.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 45 |
| Fluta_2160 | YP_004344984.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 45 |
| Fluta_2160 | YP_004344984.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 45 |
| Fluta_2160 | YP_004344984.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 45 |
| Fluta_2160 | YP_004344984.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 45 |
| Fluta_2160 | YP_004344984.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 45 |
| Fluta_2160 | YP_004344984.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 45 |
| Fluta_2160 | YP_004344984.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 44 |
