Gene Information

Name : PSEBR_a1919 (PSEBR_a1919)
Accession : YP_004353146.1
Strain : Pseudomonas brassicacearum NFM421
Genome accession: NC_015379
Putative virulence/resistance : Virulence
Product : sigma factor
Function : -
COG functional category : K : Transcription
COG ID : COG1595
EC number : -
Position : 2339532 - 2340053 bp
Length : 522 bp
Strand : +
Note : -

DNA sequence :

ATGTCCGCCAACGATCTGTCCCTACGCAGTGCTGTCGACGTTCTGTACAGTGATCATCATGGTTGGCTCCAGGGCTGGCT
GCGCAAGCGTTTGGGCAACACCTTCGATGCCGCGGACCTTGCCCAGGATACGTTTGTGCGGGTCATCAAGGCGCGCACTG
CGCTGGATATCCGTGAGCCACGACCGTACCTGTCGATGATCGCCAAAGGGCTGTTGATCGACCTGTTTCGCCGTCGCTCG
CTGGAGCAATCCTACCTCGAAGTATTGGCGGCCATGCCGCAAGAGCAGCACCCCTCGCTGGAAGAGCAGGCAATCATGCT
CCAGGCCCTGATGGAGATCGACCGCTTGCTCCTGGGGCTGGGGCCGCGGGTAAGGCAGGCGTTCATCCTGTCGCAGTTCG
ATGGCCTGACTTACCCGCAAATTGCCGAACGCCTGGGTGTCAGCGTACGCACGGTCAACAATCACATGGCCAAGGCCATG
GAGCATTGCTGCCTGATGCAGATTCAACTGCAGCTTTCATGA

Protein sequence :

MSANDLSLRSAVDVLYSDHHGWLQGWLRKRLGNTFDAADLAQDTFVRVIKARTALDIREPRPYLSMIAKGLLIDLFRRRS
LEQSYLEVLAAMPQEQHPSLEEQAIMLQALMEIDRLLLGLGPRVRQAFILSQFDGLTYPQIAERLGVSVRTVNNHMAKAM
EHCCLMQIQLQLS

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
unnamed	AAL08458.1	FecI	Virulence	SRL	Protein	2e-39	50

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
PSEBR_a1919	YP_004353146.1	sigma factor	VFG1049	Protein	7e-40	50