Gene Information

Name : PSEBR_a195 (PSEBR_a195)
Accession : YP_004351332.1
Strain : Pseudomonas brassicacearum NFM421
Genome accession: NC_015379
Putative virulence/resistance : Virulence
Product : sigma factor
Function : -
COG functional category : K : Transcription
COG ID : COG1595
EC number : -
Position : 233572 - 234072 bp
Length : 501 bp
Strand : -
Note : -

DNA sequence :

ATGTCATCTTCCGAGTTTGCAGTACAGGCGCTCTACAGCCGTCATCACGGCTGGCTCAATACGTGGCTGCGCACCCGCCT
GGGCAACGCCGCCGATGCCGCGGACCTGGCCCAAGACACCTTCATGCGCCTGTTGCAGCGTAGCGAACGCCTGGAGCTTC
GCGCCCCACGCGCCTTTTTGCGCACCATCGCCCAAGGCCTGGTGATCGACCATTGGCGTCGAGCGGAAATCGAACGCGCC
TACCTGGAAACCATAGCTCACCTGCCGGAAGCCGAAACCCCTGGTGCTGAAGCACAGGCCCTGATTCTGGAACTGCTCGA
AGCCATCGCCAGGATGCTCGAAGGCCTCAAGCCAAAAGTGCGCAGGGCCTTTCTGTTGGCCCAGTGCGAAGGCCTGACGT
ACAAGCAGATTGCCGAACAGATGGGCATTTCGTTGCGCTCGGTGGAACGCTACGTCGCCGATGCGCTGTACCACTGCTAT
GTGTTGCGCTATGAAAGCTGA

Protein sequence :

MSSSEFAVQALYSRHHGWLNTWLRTRLGNAADAADLAQDTFMRLLQRSERLELRAPRAFLRTIAQGLVIDHWRRAEIERA
YLETIAHLPEAETPGAEAQALILELLEAIARMLEGLKPKVRRAFLLAQCEGLTYKQIAEQMGISLRSVERYVADALYHCY
VLRYES

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
unnamed	AAL08458.1	FecI	Virulence	SRL	Protein	7e-28	45

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
PSEBR_a195	YP_004351332.1	sigma factor	VFG1049	Protein	3e-28	45