Gene Information

Name : PSEBR_a5193 (PSEBR_a5193)
Accession : YP_004356672.1
Strain : Pseudomonas brassicacearum NFM421
Genome accession: NC_015379
Putative virulence/resistance : Virulence
Product : RNA polymerase sigma factor
Function : -
COG functional category : K : Transcription
COG ID : COG1595
EC number : -
Position : 6291552 - 6292028 bp
Length : 477 bp
Strand : +
Note : -

DNA sequence :

TTGTACCGCGACCATCGCGCTTGGCTATTGGCCTGGCTGCGACGCAACGTGGCGTGTTCGCAACGGGCCGAAGACCTGAG
CCAGGACACTTTTGTGCGCTTGCTGGGTCGCGAGGAACTGAAGGCGCCCCGCGAGCCCCGGGCGTTTCTGGTAGCCATCG
CCAAGGGCCTGTTGTTCGACTATTTCCGTCGAGCGGCATTGGAGCAGGCCTACCTCACCGAACTGATGCTGATCCCCGAG
GCCGAACAGCCCTCGGTGGAAGAACAGCAAATCATCCTCGAAGACCTCAAGGCCATCGACCGCCTACTTGGCAAACTGTC
GAGCAAGGCCCGCGCAGCCTTCCTCTATAACCGCCTCGACGGCCTCGGCCACGCCGAAATCGCCGAGCGCCTGGGGGTTT
CGGTGCCGCGCGTACGGCAGTACCTGGCCCAAGGCATCCGACAGTGCTACATCGCACTCTATGGTGAGCCGACATGA

Protein sequence :

MYRDHRAWLLAWLRRNVACSQRAEDLSQDTFVRLLGREELKAPREPRAFLVAIAKGLLFDYFRRAALEQAYLTELMLIPE
AEQPSVEEQQIILEDLKAIDRLLGKLSSKARAAFLYNRLDGLGHAEIAERLGVSVPRVRQYLAQGIRQCYIALYGEPT

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
unnamed	AAL08458.1	FecI	Virulence	SRL	Protein	6e-33	46

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
PSEBR_a5193	YP_004356672.1	RNA polymerase sigma factor	VFG1049	Protein	2e-33	46