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Name : PSEBR_a5375 (PSEBR_a5375) Accession : YP_004356884.1 Strain : Pseudomonas brassicacearum NFM421 Genome accession: NC_015379 Putative virulence/resistance : Virulence Product : type III secretion protein Function : - COG functional category : N : Cell motility COG ID : COG1450 EC number : - Position : 6494521 - 6496671 bp Length : 2151 bp Strand : + Note : - DNA sequence : ATGCCTAACAGGTGGCTTGCACCGTACCGCTTGATGACCGCAGGCAAAGTACACCTTCGCCAGTTGATCGCACACCGCTG GACGGGACCTTCGCTGATCGCGCTGGCGCTGACCGGTGCACTGGGTGCTAGCCTGCCGGCACAGGCGGCAGTCCCGACCG ACTGGAAGAACACGCCTTACGCCTATGACGCCCAAAGCACGCCGCTGGCCAAGGTACTCGGCGACTTCGCCAATACCTTC GCGGTGCAGTTGGTGATCGATGGCACCGTGAAAGGCACCGTCGACGGCCGGATGCGCGCCGAAAGTCCCCAGGCGTTCCT CGACAGGCTCGGCCTGGAAAATCGCTTCCAGTGGTTCATGTACGGCAACACCTTGTACGTCAGCCCCTTGCAGAACCAAG ACTCCACGCGCCTGGAAGTATCCGCCGATGCCGTCCCGGACATGAAGCAGGCCTTGACCGACATCGGCCTGCTGGATCCG CGTTTCGGCTGGGGTGAATTGCCCGACGAAGGCGTGGTCCTGGTCTCCGGCCCGGAGCGCTACGTGCGCCTGGTGGCGCA GTTTGCCGAAGTGCGCAAGACACCCGAAGAGAAGCAGGAAGTGATCAGTTTCCCGCTGCGCTATGCCACCGCCGCCGACC GCAACGTCAAGTACCGCGGCGAAACGCTGGTCATTCCCGGGGTCGCCAGCATCCTGAAAGGTTTGCTGGAAAGTCGCAGC GCCGTGTCGGGGGGCATGCAGACGGCCTCTCCACAGGCGTCGTTCCAGAACATGCAGAACCAGCAGTCCATGACCATGGG CAATATCGAACAGTTGGCAATGAACGGCATGGGTCGTCCGAACACCAGCCGCGTACCATCCGGCGCGAACAGCGGTGCAG GCGGCCGGGGCAAGATCCGCGTCGAAGCCGACGTGCGCAACAACGCGGTGCTCATCTACGACGCCCCCAAGCGACGGGAA ATCTACACGCCGCTGATTCGCGATGTGGACGTGCCGCGCAAGCTGGTGGAAATCGACGCGATCATCCTCGACATCGACCG CACCCAACTGGCCGAGCTGGCCTCGAACTGGAACGTCGAGAGCGGCGACCTGATCGGCGGCGCCTCGATGATTCGACCTG GCGCCAGCTCGACGGTGTTCATTCAGGACTACGGCGATTTTTCCGCGCAACTGCGGGCCCTGGAGGGCCGTGGCCTGGCC TCGGTGGTGGCGAACCCGTCGGTACTGACCCTGGAGAACCAGCCGGCGGTCATCGACTTCAGCCGGACCGAGTACATCTC GGCCATCGGCGAGCGTGTAGCCACTGTCGAACCCATCACGGCAGGCACCAGCTTGCAGGTCGTGCCCCATGCCATCGAGA CCGGGGGCCGCAACCAGATCCAGATGTCCCTGGAAATCGAGGACGGCCGTATCGAACCCTCGGAGGTCGGCCAGCAGACG CCCAGCGTGCGCCGGGGCGTAGTCAGCACTCAGGCTGTCATGGGGGAAAGCCGGTCATTGGTGGTAGGCGGTTTTCATAC CGAAGAGACCGGCGACAACCTCGAACGGGTGCCATGGCTGGGTCGCATCCCGCTGATCGGGCCGCTGCTGTTTTCCTCGA CCACCCGCGAAACCAGTCGCCGCGAGCGGGTGTTCATCCTGACGCCGCGCCTGATCGGTGACCAGGTCGACCCGGCCCGC TACATCTCCGCCCTTGACCGCGAACAGGTCGACAGCGCCATGGCCCGCCTGGAAGAGCGTCGCAACGGCACCCGCCCCGT CGGTCGTATCGAGGTCAGCGACGTGCTCGCCCAACTCGCCGACGGCAACATTCCGGCCACGTTCAAGCAAGCCCCATCGA TTCCCTATTCGCCCGACACATTGTGCGCGTTGCAACCCGGGCTATCGCTGGACGCCGCCCGGGCCCAATGGTTCGCCGGC CCCGATTACGGCATCGCCGTGGGCGTGATACGCAACGACGATCAGCGGCGCTTGCGTTTCGACGAGGCAAGCTGCGGCAG TCGCTGGACCCTGGCCACCTCCGCCTGGCCGAAGGTGTGGCTTGAGCCCGGCGAGGAAACGGAAGTGTTCGTGGTCATGA AACAACCCACGCGCACGCCAGGCGGCGAGCGCCCTTCTCTTCTGCAAACCAGCGCGAGGACCCTGCCATGA Protein sequence : MPNRWLAPYRLMTAGKVHLRQLIAHRWTGPSLIALALTGALGASLPAQAAVPTDWKNTPYAYDAQSTPLAKVLGDFANTF AVQLVIDGTVKGTVDGRMRAESPQAFLDRLGLENRFQWFMYGNTLYVSPLQNQDSTRLEVSADAVPDMKQALTDIGLLDP RFGWGELPDEGVVLVSGPERYVRLVAQFAEVRKTPEEKQEVISFPLRYATAADRNVKYRGETLVIPGVASILKGLLESRS AVSGGMQTASPQASFQNMQNQQSMTMGNIEQLAMNGMGRPNTSRVPSGANSGAGGRGKIRVEADVRNNAVLIYDAPKRRE IYTPLIRDVDVPRKLVEIDAIILDIDRTQLAELASNWNVESGDLIGGASMIRPGASSTVFIQDYGDFSAQLRALEGRGLA SVVANPSVLTLENQPAVIDFSRTEYISAIGERVATVEPITAGTSLQVVPHAIETGGRNQIQMSLEIEDGRIEPSEVGQQT PSVRRGVVSTQAVMGESRSLVVGGFHTEETGDNLERVPWLGRIPLIGPLLFSSTTRETSRRERVFILTPRLIGDQVDPAR YISALDREQVDSAMARLEERRNGTRPVGRIEVSDVLAQLADGNIPATFKQAPSIPYSPDTLCALQPGLSLDAARAQWFAG PDYGIAVGVIRNDDQRRLRFDEASCGSRWTLATSAWPKVWLEPGEETEVFVVMKQPTRTPGGERPSLLQTSARTLP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrcC | ABA47303.1 | HrcC | Virulence | S-PAI | Protein | 1e-159 | 52 |
| hrcC | AAT96274.1 | HrcC | Virulence | S-PAI | Protein | 1e-154 | 52 |
| hrcC | AAT96315.1 | HrcC | Virulence | S-PAI | Protein | 6e-155 | 52 |
| hrcC | AAB05085.2 | HrcC | Virulence | Hrp PAI | Protein | 4e-170 | 51 |
| hrcC | AAT96354.1 | HrcC | Virulence | S-PAI | Protein | 3e-155 | 51 |
| hrcC | AAT96152.1 | HrcC | Virulence | T-PAI | Protein | 5e-166 | 50 |
| hrcC | AAT96206.1 | HrcC | Virulence | T-PAI | Protein | 3e-166 | 50 |
| hrcC | NP_791216.2 | outer-membrane type III secretion protein HrcC | Virulence | Hrp PAI | Protein | 7e-168 | 50 |
| hrcC | AAC34756.1 | HrcC | Virulence | Hrp PAI | Protein | 3e-159 | 49 |
| hrcC | AAB49179.1 | HrcC | Virulence | Hrp PAI | Protein | 2e-152 | 48 |
