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Name : rpoB (G5S_1066) Accession : YP_004377685.1 Strain : Chlamydophila pecorum E58 Genome accession: NC_015408 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : 2.7.7.6 Position : 1061474 - 1065232 bp Length : 3759 bp Strand : - Note : - DNA sequence : ATGTTCAAGAGCCCTCATCGGGTCAGTGTTAAACAGAAGGAAGATGTCTTAGATCTTCCTAACCTTATTGAAGTTCAAAT AAAATCTTATAAGCAATTTCTTCAGATTGGCAAGCTAGCAGAGGAAAGAGAGAATGTTGGCTTAGAAGAAGTCTTTAGAG AAATCTTCCCTATTAAATCCTACAATGAAGCTACAATTTTAGAATACCTTTCTTATAATTTAGGTGTGCCTAAGTATTCT CCTGAAGAATGTATTCGTAGGGGAATTACTTATAGTGTAACTTTGAAAGTTCGTTTTCGTCTTACAGATGAAACTGGGAT TAAAGAAGAAGAGGTCTATATGGGAACAATTCCCATAATGACTGATAAAGGAACTTTTATTATTAACGGTGCTGAGCGGG TTGTGGTTTCTCAGGTGCATCGTTCTCCTGGAATCAATTTTGAGCAAGAAAAGCACTCTAAAGGAAGTATTCTATTTTCC TTTAGAATCATTCCTTATAGAGGAAGTTGGTTAGAAGCTATTTTTGATGTCAACGATCTTATCTATATTCATATTGATAG GAAAAAGCGACGAAGAAAGATCTTGGCTATGACCTTCATAAGAGCTTTGGGCTACTCTTCTGACGCTGATATCATAGAAG AATTTTTCCAAATTGAGGAAAACTCTTTAAGAAGTGAAAAAGACTTTACACTTCTTGTTGGGAAAGTTTTAGCTGATAAT GTTATTGATGAGACCTCTTCTCTTGTTTATGGCAAGGCTGGAGAAAAACTCAGTACAGCTATGCTTAAGCGTATGTTAGA TGCAGGCATAGCTTCCTTAAAAATTGCTGTAGGAGCAGATGAAAATCACCCTATCATCAAGATGTTGGCAAAAGATCCAA CGGACTCCTACGAATCTGCTCTTAAAGATTTTTATCGTAGATTACGCCCAGGTGAGCCTGCAACTCTTGCTAATGCACGA TCTACGATCATGCGATTATTTTTTGATCCTAAACGGTATAATTTAGGTCGTGTAGGGCGGTATAAGCTAAATTGCAAGCT AGGTTTTCCTATAGATGATGAGACGCTCTCTCAGGTAACTTTGCGGAAAGAAGATGTTATCGGTGCCTTGAAGTACTTAA TTCGTTTGAAAATGGGTGATGAAAAGGCTACGGTAGATGATATTGACCACTTAGCAAACCGGCGTGTTCGTTCTGTGGGT GAGCTTATCCAAAATCAGTGCCGTGCTGGTTTAGCTAGAATGGAAAAGATTGTTCGAGAGAGAATGAATCTTTTCGATTT TTCTTCTGATACTTTGACCCCTGGAAAAGTTGTTTCTGCAAAAGGGCTTGCAAGCGTACTTAAAGATTTTTTTGGGCGCT CTCAGCTATCTCAATTTATGGATCAAACTAACCCTGTAGCAGAGCTTACTCACAAGCGTCGTTTATCTGCTTTAGGACCT GGAGGGTTGAATAGAGAGCGTGCAGGATTTGAAGTCCGAGACGTTCACTCTAGTCATTACGGACGTATTTGCCCTATTGA AACTCCAGAAGGGCCAAATATTGGTTTGATTTCTTCTCTTTCTGCCTTTGCGAAAATTAATGAGTTTGGATTTATTGAAA CTCCGTATCGTATCGTGCGTGACGGAGTTGTGACAGATGAAATTGAATATATGGCAGCCAATGTAGAAGAGGAGTGCGTA ATAGCTCAGGCTTCTGCAAGTTTAGATGAATTTAATATGTTCACAGAGCCTTTGTGTTGGGCTCGTTATCGTGGGGAAGC TTTTGAAGCAGATACGTCTACAGTCACGCATATGGATGTTTCTCCTAAGCAGCTGGTATCTATCGTTACTGGCTTAATTC CCTTCTTAGAGCATGATGACGCGAACCGAGCCTTGATGGGATCAAACATGCAGAGGCAAGCAGTGCCTTTGTTAAAAACA GAAACGCCAATAGTTGGTACTGGATTAGAAGCGCGTGCAGCGAAAGATTCCGGGGCTATCGTCGTCGTAGAGGAGGATGG CGTGGTTGAGTATGTTGACGGATATAAGGTTGTTGTTGCAGCAAAGTATAATCCGACAATTAAGCGTACGTACCATCTGA AAAAGTTCTTAAGATCTAATTCTGGGACGTGTATTAATCAAAGGCCTTTGTGTTCTGTCGGTGACGTTGTGACCAAAGGG GATGTAATAGCAGATGGACCAGCTACGGATCGTGGAGAGCTTGCTTTGGGGAAAAATGTTCTGGTTGCATTCATGCCCTG GTATGGATACAACTTCGAAGATGCGATTATTATCTCTGAAAAGCTCATTAAAAATGATGCTTATACTTCGATTTACATTG AAGAGTTTGAGTTAACCGCTCGTGATACAAAGCTAGGTAAGGAAGAGATCACTAGAGATATTCCTAATGTGTCCGAAGAG ATTTTGGCGAATCTTGGTGAGGATGGGATTATCCGTATTGGCGCGGAAGTGAAGCCTGGAGATATTTTAGTTGGAAAAAT CACTCCAAAATCTGAAACAGAATTAGCTCCAGAGGAGCGGTTGCTTAGGGCTATTTTTGGAGAAAAAGCTGCAGATGTGA AAGACGCTTCTCTTACAGTGCCTCCAGGGACTGAAGGCGTTGTCATGGATGTAAAAGTCTTTAGTCGCAAAGATAGATTG TCGAAAAGCGATGATGAGCTTATTGAAGAGGCTGTACATCTTAAGGACTTGCAGAAAAACTATAAAAATCAAGTTGCCGC ACTTAAAACCGAATATCGCGAAAAGATTGGGGCTCTTTTATTTAATGAAAAAGCTCCAGCTGCCATTATTCATCGTCGCA CAGCAGATGTGTTGGTTCACGAAGGAACGATTTTTGATCAGGAGATCATAGAGATTCTTGAGAAGGAGGCTTTAGTTGAT CTTCTTATGCCTCCATGTGAGATCTACGATGTTTTGAAGGGAATGTTGTCTGACTATGAAACAGCATTACAAAGTTTAGA AGTAAATTATAAAACTGAGATTGAGCACATTCGTGAAGGAGATGCAGACCTTGATCATGGTGTAATTCGCCAGGTGAAAG TCTATGTTGCTTCAAAGCGTAAACTGCAAGTCGGAGATAAAATGGCTGGGCGCCATGGAAATAAGGGTGTGGTATCGAAA ATTGTTCCAGAAGCAGATATGCCATATCTTTCCAATGGTGAAACCGTTCAAATGATTCTCAATCCTCTTGGGGTGCCTTC TAGGATGAACCTCGGGCAAGTATTAGAGACGCACTTAGGTTATGCAGCGAAAACTGCAGGAATTTATGTGAAGACCCCAG TATTTGAAGGATTTCCTGAGAGTCGCATCTGGGATATGATGATAGAGCAGGGGCTTCCTGCAGATGGAAAGTCTTTCTTG TATGATGGAAAGACCGGTGAACGATTCGATAATAGAGTTGTTATCGGTTATATTTATATGTTAAAACTTAGCCACTTAAT TGCGGATAAGATTCACGCAAGGTCTATTGGGCCATACTCTTTAGTTACACAACAACCTTTGGGTGGAAAAGCTCAGATGG GAGGACAGAGATTTGGAGAAATGGAGGTTTGGGCCTTGGAAGCTTATGGCGTGGCTCACTTACTTCAGGAAATTTTAACA GTAAAATCTGATGATGTTTCCGGAAGGACAAGGATTTATGAATCCATTGTTAAGGGAGAGAATCTCTTAAGATCAGGAAC TCCTGAGTCGTTTAATGTGTTAATCAAAGAAATGCAAGGCTTAGGACTTGATGTTCGTCCTATGGTAGTAGACGCTTAA Protein sequence : MFKSPHRVSVKQKEDVLDLPNLIEVQIKSYKQFLQIGKLAEERENVGLEEVFREIFPIKSYNEATILEYLSYNLGVPKYS PEECIRRGITYSVTLKVRFRLTDETGIKEEEVYMGTIPIMTDKGTFIINGAERVVVSQVHRSPGINFEQEKHSKGSILFS FRIIPYRGSWLEAIFDVNDLIYIHIDRKKRRRKILAMTFIRALGYSSDADIIEEFFQIEENSLRSEKDFTLLVGKVLADN VIDETSSLVYGKAGEKLSTAMLKRMLDAGIASLKIAVGADENHPIIKMLAKDPTDSYESALKDFYRRLRPGEPATLANAR STIMRLFFDPKRYNLGRVGRYKLNCKLGFPIDDETLSQVTLRKEDVIGALKYLIRLKMGDEKATVDDIDHLANRRVRSVG ELIQNQCRAGLARMEKIVRERMNLFDFSSDTLTPGKVVSAKGLASVLKDFFGRSQLSQFMDQTNPVAELTHKRRLSALGP GGLNRERAGFEVRDVHSSHYGRICPIETPEGPNIGLISSLSAFAKINEFGFIETPYRIVRDGVVTDEIEYMAANVEEECV IAQASASLDEFNMFTEPLCWARYRGEAFEADTSTVTHMDVSPKQLVSIVTGLIPFLEHDDANRALMGSNMQRQAVPLLKT ETPIVGTGLEARAAKDSGAIVVVEEDGVVEYVDGYKVVVAAKYNPTIKRTYHLKKFLRSNSGTCINQRPLCSVGDVVTKG DVIADGPATDRGELALGKNVLVAFMPWYGYNFEDAIIISEKLIKNDAYTSIYIEEFELTARDTKLGKEEITRDIPNVSEE ILANLGEDGIIRIGAEVKPGDILVGKITPKSETELAPEERLLRAIFGEKAADVKDASLTVPPGTEGVVMDVKVFSRKDRL SKSDDELIEEAVHLKDLQKNYKNQVAALKTEYREKIGALLFNEKAPAAIIHRRTADVLVHEGTIFDQEIIEILEKEALVD LLMPPCEIYDVLKGMLSDYETALQSLEVNYKTEIEHIREGDADLDHGVIRQVKVYVASKRKLQVGDKMAGRHGNKGVVSK IVPEADMPYLSNGETVQMILNPLGVPSRMNLGQVLETHLGYAAKTAGIYVKTPVFEGFPESRIWDMMIEQGLPADGKSFL YDGKTGERFDNRVVIGYIYMLKLSHLIADKIHARSIGPYSLVTQQPLGGKAQMGGQRFGEMEVWALEAYGVAHLLQEILT VKSDDVSGRTRIYESIVKGENLLRSGTPESFNVLIKEMQGLGLDVRPMVVDA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 47 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 47 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | YP_004377685.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 47 |
| rpoB | YP_004377685.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 47 |
| rpoB | YP_004377685.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 47 |
| rpoB | YP_004377685.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 47 |
| rpoB | YP_004377685.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 47 |
| rpoB | YP_004377685.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 47 |
| rpoB | YP_004377685.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 44 |
| rpoB | YP_004377685.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 44 |
