Gene Information

Name : MDS_1216 (MDS_1216)
Accession : YP_004378999.1
Strain : Pseudomonas mendocina NK-01
Genome accession: NC_015410
Putative virulence/resistance : Virulence
Product : ECF subfamily RNA polymerase sigma-24 factor
Function : -
COG functional category : K : Transcription
COG ID : COG1595
EC number : -
Position : 1330802 - 1331320 bp
Length : 519 bp
Strand : -
Note : -

DNA sequence : 
ATGCCTGCCGCCGAGCCCCCTTTCCAGCAAGCGATCCATGAGCTGTACAGTAACCATCACGGTTGGCTGTTCGCCTGGTT
GCGGCGCAAGCTGGGCTGTTCTCATAACGCGGCCGATCTGGCGCAGGACACCTTTGCCCGCATCCTTTCCTCGCGAGAGG
TTCTCGGCACCATTCGCGAGCCACGTGCCTTTCTGACGACAACGGCGCGCCGTCTGGTGATCGACAAGTCGCGCCGCAAA
CAGATCGAAGACGCCTACCTGCGTGAACTGGCGCTGACCGTCGAAAGCCTTTCCGGTTACCAGTCACCCGAACAGATTCT
CACCACGCTCGAAGCCCTGGAGCAGATCGCGTTCGTGCTGGAAGAACTCAGCGCCAAGCAGCGCCAGGCTTTCCTGCTCT
ACTTCCTCGATGGCCAAAGTCAGATCGACATTGCTGTGCAGATGGGGATTTCCGAGCGCATGGTGCGCAAGCATCTTCTG
CAAGCGCTGCTGCATTGCAGCAATGCACTGGAAGTCTGA

Protein sequence : 
MPAAEPPFQQAIHELYSNHHGWLFAWLRRKLGCSHNAADLAQDTFARILSSREVLGTIREPRAFLTTTARRLVIDKSRRK
QIEDAYLRELALTVESLSGYQSPEQILTTLEALEQIAFVLEELSAKQRQAFLLYFLDGQSQIDIAVQMGISERMVRKHLL
QALLHCSNALEV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL08458.1 FecI Virulence SRL Protein 3e-27 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
MDS_1216 YP_004378999.1 ECF subfamily RNA polymerase sigma-24 factor VFG1049 Protein 1e-27 46