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Name : MDS_1887 (MDS_1887) Accession : YP_004379670.1 Strain : Pseudomonas mendocina NK-01 Genome accession: NC_015410 Putative virulence/resistance : Unknown Product : cytochrome c-type biogenesis protein CcmF Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG1138 EC number : - Position : 2067630 - 2069603 bp Length : 1974 bp Strand : + Note : - DNA sequence : ATGATTCCCGAGCTCGGCCATCTGGCGATGATTCTGGCGCTGTGCCTGTGCCTGGTACAGGCGACACTGCCGCTGATCGG TGCCTGGCGCGGTGACCACCAGTGGATGAGCCTGGCGCAGCCGGCCGCCTGGGGTCAGTTCGCCTTCCTGTTGTTCTCCT TCCTGTGCCTGACCTATGCCTTCATGGTCGACGACTTCTCCGTCGCCTACGTGGCCAACAACTCCAACAGCGCGCTGCCC TGGTACTACAAGTTCAGCGCGGTATGGGGCGCGCACGAAGGTTCGTTGCTGCTGTGGGCCTTGATCCTGGCCGGCTGGAC CTTCGCCGTGGCGATCTTCTCGCGCCATCTGCCGGAAGAGATGCTCGCCCGCGTGCTGGCGGTGATGGGCATGATCAGCG TTGGCTTCCTGCTGTTTTTGATCGTCACTTCCAACCCCTTCGAACGTCTGCTGCCGAACTCGCCCGTCGACGGCCGCGAC CTCAACCCGCTGCTGCAGGACTTCGGCCTGATCGTGCATCCGCCGATGCTGTACATGGGCTATGTCGGCTTCTCGGTAGC CTTCGCCTTCGCCATTGCCGCGCTGCTCGGCGGCAAGCTGGACGCCGCCTGGGCGCGCTGGTCGCGTCCATGGACCATCG TCGCCTGGGCCTTCCTCGGCATCGGTATCGCCCTCGGTTCCTGGTGGGCCTACTACGAACTGGGCTGGGGCGGCTGGTGG TTCTGGGACCCGGTGGAAAATGCCTCGTTCATGCCCTGGCTGGTGGGCACGGCGCTGATCCACTCATTGGCCGTGACGGA AAAACGCGGTGTGTTCAAGAGCTGGACGGTGCTGCTGGCCATCGCCGCGTTCTCCCTCAGCCTCTTGGGGACCTTCCTGG TGCGTTCCGGCGTGCTGACCTCGGTGCATGCCTTTGCCACCGATCCGGAGCGCGGCGTGTTCATCCTCGCCTTCCTGCTG GTGGTGGTCGGCGGTTCGCTGACGCTGTTCGCCGTGCGCGCACCGGTGGTCAGGAGCCAGGTCGGCTTTGGCCTGTGGTC GCGTGAAACCCTGCTGCTGGTCAATAACATCGTACTGGTGGTGTCGGCTGCGATGATCCTGCTCGGCACCCTCTACCCGC TGGTGCTCGATGCCCTGACCGGCGCCAAGCTGTCGGTCGGCCCTCCTTACTTCAATGCGTTGTTCCTGCCGCTGATGGCG CTGCTGATGGCGGTGATCAGCGTCGGTGTGCTGGTGCGCTGGAAGGATACGCCGCTGAAGTGGCTGGGCAGCATGCTGAC GCCGGTGCTGGTCGCCAGCGTGGTGCTGGCGGTAGCCGCGACCTACTTGCATGGTGATTTCCATTGGGCTGTATTGGCCG TTTGCCTGCTGGCCTTCTGGGTGGTGCTTGGCGGTGTGCGCGACATTCTCGACAAGACACGACACAAGGGGCTGATCAAG GGCCTGCCGAGCCTGACTCGCAGCTACTGGGGCATGCAGATGGCGCACCTGGGGTTCGCCGTATGCGCCCTGGGCGTGGT CCTGACCAGCTTGGGCAGCTATGAGCGCGACCTGCGCATGGCACCGGGCGAGTCGGTGGAGCTGGCAGGCTATCGCTTCC AGTTCGACGGCGCCGTGCATCACGAAGGCCCCAACTTCATCTCCGACAAGGGCACGGTGCGTGTCTTCGATGGTGAGCGG CAGATCAAGGTGCTGCATCCGGAGAAGCGCCTGTATACCGTGCAACAGTCGACCATGACCGAGGCGGGCATCGACGCCGG TTTCACTCGCGATCTGTTCGTTGCCCTGGGCGAGCCGCTGGAGCAGGGCGCCTGGGCCGTGCGTATTCACATCAAGCCCT TCGTGCGCTGGATCTGGCTCGGCGGTCTGCTGATGGCCTTCGGTGGCTTCCTCGCCGCGGCCGACAAGCGCTACCGGATC AAGGTCCGCACCCGCGTGCGCGACGCCCTGGGCTTGCAGGAGGCCAGCGCATGA Protein sequence : MIPELGHLAMILALCLCLVQATLPLIGAWRGDHQWMSLAQPAAWGQFAFLLFSFLCLTYAFMVDDFSVAYVANNSNSALP WYYKFSAVWGAHEGSLLLWALILAGWTFAVAIFSRHLPEEMLARVLAVMGMISVGFLLFLIVTSNPFERLLPNSPVDGRD LNPLLQDFGLIVHPPMLYMGYVGFSVAFAFAIAALLGGKLDAAWARWSRPWTIVAWAFLGIGIALGSWWAYYELGWGGWW FWDPVENASFMPWLVGTALIHSLAVTEKRGVFKSWTVLLAIAAFSLSLLGTFLVRSGVLTSVHAFATDPERGVFILAFLL VVVGGSLTLFAVRAPVVRSQVGFGLWSRETLLLVNNIVLVVSAAMILLGTLYPLVLDALTGAKLSVGPPYFNALFLPLMA LLMAVISVGVLVRWKDTPLKWLGSMLTPVLVASVVLAVAATYLHGDFHWAVLAVCLLAFWVVLGGVRDILDKTRHKGLIK GLPSLTRSYWGMQMAHLGFAVCALGVVLTSLGSYERDLRMAPGESVELAGYRFQFDGAVHHEGPNFISDKGTVRVFDGER QIKVLHPEKRLYTVQQSTMTEAGIDAGFTRDLFVALGEPLEQGAWAVRIHIKPFVRWIWLGGLLMAFGGFLAAADKRYRI KVRTRVRDALGLQEASA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ccmF | AAN62106.1 | putative cytochrome C-type biogenesis protein CcmF | Not tested | PAGI-2(C) | Protein | 7e-136 | 57 |
| ccmF | YP_217241.1 | cytochrome c-type biogenesis protein | Not tested | SPI-12 | Protein | 2e-124 | 56 |
