Gene Information

Name : MDS_2734 (MDS_2734)
Accession : YP_004380517.1
Strain : Pseudomonas mendocina NK-01
Genome accession: NC_015410
Putative virulence/resistance : Virulence
Product : ECF subfamily RNA polymerase sigma factor
Function : -
COG functional category : K : Transcription
COG ID : COG1595
EC number : -
Position : 2994243 - 2994758 bp
Length : 516 bp
Strand : +
Note : -

DNA sequence :

ATGTTAACGCTGCTCCCCGAGACAGCCACGCACGCTCAGTTGGATGCCCTCTATCGCAACCACCACGGCTGGCTGAAAGG
CTGGCTGCGCCAGCGCCTAAACAATTCCGCCGATGCAGCTGACCTGGCGCAGGACACCTTCGTCCGCGTGCTACTGGCAC
GTACCGCCGACAGTCTGCGCGAGCCGAGGCATTATCTGGCGACGGTTGCTCGGGGGCTGGTGATCGATCTCTATCGGCGC
CGTTCGCTAGAGCAAGCTTATCTGGAGGCGTTGGCGCTAAGACCAGAGCAATACGCGCCGTCGGCAGAAGAGAGAGTGTT
GATTCTCGACAGCCTGCTGGCCATCGACCAAATGCTCGACGGCATGGGTGAGCGTACACGCGGCATCTTCCTCGCGGTTC
AGCTTGATGGGCTGAGCTACGAGAAAGCTGCCGCGCGCATGGGCGTTTCCGTGACCACCGTGCGTAAACATCTGGCTAAG
GCGTTGCTCCATTGCCTACTGCTGGAGGAGGCATGA

Protein sequence :

MLTLLPETATHAQLDALYRNHHGWLKGWLRQRLNNSADAADLAQDTFVRVLLARTADSLREPRHYLATVARGLVIDLYRR
RSLEQAYLEALALRPEQYAPSAEERVLILDSLLAIDQMLDGMGERTRGIFLAVQLDGLSYEKAAARMGVSVTTVRKHLAK
ALLHCLLLEEA

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
unnamed	AAL08458.1	FecI	Virulence	SRL	Protein	3e-35	48

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
MDS_2734	YP_004380517.1	ECF subfamily RNA polymerase sigma factor	VFG1049	Protein	1e-35	48