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Name : MDS_4300 (MDS_4300) Accession : YP_004382083.1 Strain : Pseudomonas mendocina NK-01 Genome accession: NC_015410 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : - Position : 4702476 - 4706549 bp Length : 4074 bp Strand : - Note : - DNA sequence : ATGGCTTACTCATACACTGAGAAAAAACGTATCCGCAAGGACTTTAGCAAGTTGCCGGATGTCATGGATGTGCCTTACCT CCTGGCCATCCAGCTGGATTCGTACCGCGAATTCCTGCAGCAAGGGGTGAGCAAGGAACAGTTCCGTGACATCGGCCTGC ATGCGGCCTTCAAATCCGTATTCCCGATCATCAGCTACTCCGGCAACGCCGCCCTGGAGTACGTCGGCTATCGCCTGGGC GAGCCGGCGTTCGACGTCAAGGAGTGCGTCCTGCGTGGCGTGACCTTCGCCGTGCCGCTGCGCGTGAAAGTCCGTCTGAT CATTTTCGACAAAGAATCGTCGAACAAAGCGATCAAGGACATCAAAGAGCAAGAAGTGTACATGGGCGAAATTCCGCTCA TGACCGAGAACGGTACCTTCGTCATCAACGGTACCGAGCGCGTGATCGTGTCCCAGCTGCACCGTTCGCCGGGTGTGTTC TTCGACCACGACCGTGGCAAGACCCACAGCTCGGGCAAGCTGCTGTACTCCGCGCGCATCATTCCTTACCGCGGTTCCTG GCTGGACTTCGAGTTCGACCCGAAGGACGCGGTCTTCGTGCGTATCGACCGTCGCCGCAAACTGCCGGCGTCAGTTCTGC TGCGCGCACTGGGCTACAGCACCGAAGAAGTGCTGGATGCCTTCTACGACACCAACGTCTATCACGTTAAGAACGAGAGC CTGAGCCTGGAGCTGGTGCCTCAGCGTCTGCGTGGTGAAGTCGCGGTCCTGGACATCAAGGACGCCAGCGGCAAGGTGAT CGTCGAGCAGGGCCGTCGTATCACTGCCCGTCATATCAACCAGCTGGACAAGGCTGGTATCAAGGAGCTGGAAGTTCCGC TCGATTACGTGATTGGCCGTACCACTGCCAAGGCTATCGTGCACCCGGCTACCGGCGAGATCATCGCCGAATGCAACACC GAGCTGACCGCCGACCTGCTGGTCAAGATGGCCAAGGCGCAGGTTGTCCGCTTCGAGACCCTGTACACCAACGACATCGA CTGCGGCCCGTTCATCTCCGATACCCTGAAGATCGACAGCACCACCAATCAGTTGGAAGCGCTGGTCGAGATCTATCGCA TGATGCGTCCTGGCGAGCCGCCAACCAAGGATGCTGCCGAAACCCTGTTCAACAACCTGTTCTTCAGCGCCGAGCGTTAC GACCTGTCCGCCGTGGGCCGCATGAAGTTCAACCGCCGTATCGGTCGTACCGAGATCGAAGGTTCGGGCGTGCTGAGCAA GGAAGACATCGTAGCCGTGCTGAAGACCCTGGTCGACATCCGTAACGGCAAAGGCATCGTCGACGACATCGACCACCTGG GTAACCGTCGCGTGCGTTGCGTCGGCGAGATGGCCGAGAACCAGTTCCGCGTTGGCCTGGTGCGTGTAGAACGCGCGGTC AAGGAACGCCTGTCGATGGCCGAAAGCGAAGGCCTGATGCCGCAGGACCTGATCAACGCCAAGCCGGTTGCGGCGGCGGT GAAGGAGTTCTTCGGTTCCAGCCAGCTCTCGCAGTTCATGGACCAGAACAACCCGCTCTCCGAGATCACCCACAAGCGCC GCGTCTCCGCACTCGGCCCGGGCGGTCTGACCCGTGAGCGCGCCGGCTTCGAAGTCCGCGACGTACACCCGACCCACTAC GGCCGTGTGTGCCCGATCGAAACCCCGGAAGGTCCGAACATCGGTCTGATCAACTCGCTGGCTGCCTATGCCCGCACCAA CCAGTATGGCTTCCTGGAAAGCCCGTACCGCGTGGTCAAGGAAGGTCAGGTCACCGACGAGATCGTGTTCCTGTCCGCCA TCGAAGAAGCCGATCACGTGATCGCTCAGGCGTCCGCGACCCTGAACGACAAGGGTCAGCTGATCGACGAGCTGGTCGCC GTACGTCACCTGAACGAATTCACCGTCAAGGCGCCGGAAGACGTCACCCTGATGGACGTTTCGCCGAAGCAGGTAGTCTC GGTTGCCGCCTCGCTGATTCCGTTCCTCGAGCACGACGACGCCAACCGTGCACTCATGGGTTCGAACATGCAGCGTCAGG CTGTACCGACCCTGCGCGCTGACAAGCCGCTGGTAGGTACCGGCATGGAGCGCAACGTCGCCCGTGACTCTGGCGTCTGC GTCGTGGCTCGTCGTGGTGGTGTGATCGATTCCGTTGATGCCAGCCGCATCGTGGTTCGTGTCAATGATGACGAAGTCGA AACTGGCGAAGCCGGTGTCGACATCTACAACCTGACCAAGTACACCCGCTCCAACCAGAACACCTGCATCAACCAGCGCC CGCTGGTGAGCAAGGGTGATCAGGTATCGCGTGGCGACATCATGGCTGACGGCCCGTCCACTGACATGGGTGAACTGGCG CTGGGTCAGAACATGCGCGTGGCGTTCATGCCGTGGAACGGCTTCAACTTCGAAGACTCCATCTGCCTGTCCGAGCGCGT GGTTCAGGAAGACCGCTTCACCACCATCCACATCCAGGAGCTCACCTGTGTGGCGCGTGACACCAAGCTCGGCCCAGAGG AAATCTCCTCTGATATCCCGAACGTCGGTGAAGCTGCTCTGAACAAGCTGGACGAAGCCGGTATCGTCTACGTCGGTGCC GAGGTCGGCCCGGGCGACATTCTGGTCGGTAAGGTCACCCCGAAAGGCGAGACCCAGCTGACTCCGGAAGAGAAGCTGCT GCGCGCGATCTTCGGTGAGAAGGCGTCCGACGTGAAGGACACCTCCCTGCGCGTGCCGACCGGCACCAAGGGCACCGTCA TCGACGTGCAGGTCTTCACCCGTGATGGTGTCGAGCGCGACAGCCGCGCCCTGGCCATCGAGAAGCAGCAACTGGACGAG ATCCGCAAGGACCTGAACGAAGAGTTCCGCATCGTCGAAGGCGCGACCTTCGAGCGTCTGCGTTCGGCTTTGGTTGGCGC GATCGCCGAAGGTGGCGCTGGCCTGAAGAAAGGCACCGCGATCACCGACGAGTTCCTCGACGGTCTCGAGCGTGGCCAGT GGTTCAAACTGCGCATGGCCGACGACGCCCTGAACGAGCAGCTGGAGAAGGCCCAGGCCTATATCTCCGACCGCCGTCAG ATGCTCGACGACAAGTTCGAAGACAAGAAGCGCAAGCTGCAGCAGGGCGATGACCTGGCTCCGGGCGTACTGAAGATCGT CAAGGTCTACCTGGCCATCCGCCGTCGCATCCAGCCGGGTGACAAGATGGCCGGTCGTCACGGTAACAAGGGTGTGGTCT CGGTGATTATGCCGGTCGAAGACATGCCGCACGACGCCAACGGTACGCCGGTGGACATCGTTCTGAACCCGCTGGGCGTA CCGTCGCGTATGAACGTCGGTCAGATCCTCGAAACCCACCTGGGCCTGGCGGCCAAGGGCCTGGGCGAGAAGATTAACCG CATGCTCGAAGAGCAGCGCAAGGTTGCCGAACTGCGCAAGTTCCTCGCCGAGATCTACAACGAGATCGGTGGTCGCCAGG AAAACCTCGACGAGTTCTCCGACAACGAGATCCTCGAGCTGGCGAAGAACCTCAAGGGCGGTGTGCCGATGGCGACTGCC GTGTTCGACGGCGCCAAGGAAACCGAGATCAAGGCCATGCTGAAGCTGGCCGATCTGCCGGAAAGCGGCCAGATGCGTCT GTTCGACGGTCGTACCGGTAACCAGTTCGAGCGCCCGACCACCGTCGGCTACATGTACATGCTGAAGCTGAACCACCTGG TGGACGACAAGATGCACGCGCGTTCCACTGGTTCCTACAGCCTGGTTACCCAGCAGCCGCTGGGTGGTAAGGCGCAGTTC GGTGGTCAGCGCTTCGGGGAGATGGAGGTCTGGGCGCTGGAAGCCTACGGCGCCGCCTACACCCTGCAGGAAATGCTGAC CGTGAAGTCGGACGACGTGAACGGCCGTACCAAGATGTACAAGAACATCGTGGATGGCGATCACCGTATGGAGCCGGGCA TGCCCGAGTCCTTCAACGTACTGATCAAAGAGATCCGTTCGCTCGGCATCGACATCGATCTGGAAACCGAATAA Protein sequence : MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQQGVSKEQFRDIGLHAAFKSVFPIISYSGNAALEYVGYRLG EPAFDVKECVLRGVTFAVPLRVKVRLIIFDKESSNKAIKDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVF FDHDRGKTHSSGKLLYSARIIPYRGSWLDFEFDPKDAVFVRIDRRRKLPASVLLRALGYSTEEVLDAFYDTNVYHVKNES LSLELVPQRLRGEVAVLDIKDASGKVIVEQGRRITARHINQLDKAGIKELEVPLDYVIGRTTAKAIVHPATGEIIAECNT ELTADLLVKMAKAQVVRFETLYTNDIDCGPFISDTLKIDSTTNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSAERY DLSAVGRMKFNRRIGRTEIEGSGVLSKEDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHPTHY GRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVKEGQVTDEIVFLSAIEEADHVIAQASATLNDKGQLIDELVA VRHLNEFTVKAPEDVTLMDVSPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC VVARRGGVIDSVDASRIVVRVNDDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVSKGDQVSRGDIMADGPSTDMGELA LGQNMRVAFMPWNGFNFEDSICLSERVVQEDRFTTIHIQELTCVARDTKLGPEEISSDIPNVGEAALNKLDEAGIVYVGA EVGPGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDSRALAIEKQQLDE IRKDLNEEFRIVEGATFERLRSALVGAIAEGGAGLKKGTAITDEFLDGLERGQWFKLRMADDALNEQLEKAQAYISDRRQ MLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQPGDKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDIVLNPLGV PSRMNVGQILETHLGLAAKGLGEKINRMLEEQRKVAELRKFLAEIYNEIGGRQENLDEFSDNEILELAKNLKGGVPMATA VFDGAKETEIKAMLKLADLPESGQMRLFDGRTGNQFERPTTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQF GGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 74 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 74 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| MDS_4300 | YP_004382083.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 95 |
| MDS_4300 | YP_004382083.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 74 |
| MDS_4300 | YP_004382083.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 74 |
| MDS_4300 | YP_004382083.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 74 |
| MDS_4300 | YP_004382083.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 74 |
| MDS_4300 | YP_004382083.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 74 |
| MDS_4300 | YP_004382083.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 74 |
| MDS_4300 | YP_004382083.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 73 |
| MDS_4300 | YP_004382083.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 73 |
| MDS_4300 | YP_004382083.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 73 |
| MDS_4300 | YP_004382083.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 73 |
| MDS_4300 | YP_004382083.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 73 |
| MDS_4300 | YP_004382083.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 72 |
| MDS_4300 | YP_004382083.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 72 |
| MDS_4300 | YP_004382083.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 69 |
| MDS_4300 | YP_004382083.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 67 |
| MDS_4300 | YP_004382083.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 65 |
| MDS_4300 | YP_004382083.1 | DNA-directed RNA polymerase subunit beta | CP001581.1.gene3846. | Protein | 0.0 | 48 |
| MDS_4300 | YP_004382083.1 | DNA-directed RNA polymerase subunit beta | CP003583.1.gene2745. | Protein | 0.0 | 47 |
| MDS_4300 | YP_004382083.1 | DNA-directed RNA polymerase subunit beta | AE016830.1.gene3155. | Protein | 0.0 | 47 |
