Gene Information

Name : MDS_0097 (MDS_0097)
Accession : YP_004377880.1
Strain : Pseudomonas mendocina NK-01
Genome accession: NC_015410
Putative virulence/resistance : Virulence
Product : RNA polymerase sigma factor FecI
Function : -
COG functional category : K : Transcription
COG ID : COG1595
EC number : -
Position : 112224 - 112730 bp
Length : 507 bp
Strand : +
Note : -

DNA sequence :

ATGTCCGCCGACGTCCAGGTGCTGCACACCCTCTATCGCGATCACCATAGCTGGCTGCAAGGCTGGCTGCGGCGGCGCCT
GGGCAACGGCTGCGATGCCGCAGACCTGGCCCAGGACACCTTCGTGCGCCTGTTGCGAGCCGGCAATGCCGCGAGCATCC
GCGAGCCGCGTGACTATCTGGCCACCGTTGCGCGCGGCTTGATGGTCGACTTCCTGCGCCGGCGCTCGCTGGAGCAGGCC
TACCTCGAGGCAATGGCCTTGCAGCCGCAGGCCGAACAACCCAGCGCCGAGCAGCAGGCGTTGTTGCTGGAAGCGCTGAT
GGAGGTCGACCGTATGCTTGCAGGGCTCGGCCGGAACGTGCGCGAGGTGTTCATCCTCTCCCAGCTCGACGGCCTCACCT
ACGCGCAGATCGCCGCCCGCCTGGGCATTTCCCTGCGTAGCGTGAACAGCTACATGGCTCGCGCGGTCGAGCACTGCTGC
CTACTGCAGGCCGGCTGGCAATCGTGA

Protein sequence :

MSADVQVLHTLYRDHHSWLQGWLRRRLGNGCDAADLAQDTFVRLLRAGNAASIREPRDYLATVARGLMVDFLRRRSLEQA
YLEAMALQPQAEQPSAEQQALLLEALMEVDRMLAGLGRNVREVFILSQLDGLTYAQIAARLGISLRSVNSYMARAVEHCC
LLQAGWQS

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
unnamed	AAL08458.1	FecI	Virulence	SRL	Protein	3e-31	49

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
MDS_0097	YP_004377880.1	RNA polymerase sigma factor FecI	VFG1049	Protein	1e-31	49