|
Name : Alide2_1905 (Alide2_1905) Accession : YP_004387799.1 Strain : Alicycliphilus denitrificans K601 Genome accession: NC_015422 Putative virulence/resistance : Unknown Product : DEAD/DEAH box helicase Function : - COG functional category : K : Transcription COG ID : COG0553 EC number : - Position : 2006995 - 2009277 bp Length : 2283 bp Strand : + Note : SMART: DEAD-like helicase, N-terminal; KEGG: rpf:Rpic12D_0667 DEAD-like helicase DNA sequence : ATGTCTCTCGATACCGACGTTGTTCCCGCCGCCCATGGCACGCCCATCCAGGGCGACCTGCTCGAAGCGGCTGCTTCTCC CCTGGCGATGAGCCTTCAGGATTTCGTTGCCGAGTTCGGCGACGAGCTGCTGGATTCGCTCAACCGCGCCAACCCTCCCG TCTACACCGGCCAGGCCCGGCCGCATCGGCAGCTCGTGCTGGCCAGTCTCAAGCGCAAGCTGTTCGGCGCGCAAGCCGAG GTGGTGCATGCCGTCACCGAGTTGCTGGCCGACCGCGGCGAACGCGCCGCGATCGTCAATGGCGAGATGGGCTGCGGCAA GACGACCGTTGGCATCGCCACGGCGGCCGTGCTGCACGCCGAAGGTTACCGCCGCACGCTGGTCCTCTCACCGCCTCACC TGGTCTACAAGTGGCGCCGGGAAATCCAGGAGACCGTGGCCGGCGCGAAGGTCTGGGTGCTCAATGGCCCGGACACGCTG GTCAAGCTCATCAAGCTGCGCGAGCAGTTGGGCGTGCCGGTACGCGGCCAGGAGTTCTACGTGCTCGGGCGCGTGCGGAT GCGCATGGGTTTCCACTGGAAGCCCGTCTTCAACGTGCGGCACACGAAGCACGGCGAAGTCGGCGCATGCCCGGATTGCG GCCAGGTCATCACCAACCTCGACGGCGAGCCGATCAACCCGGTCGAACTCGAAGCCGAGGACTACCGCCGCCGGTGCAGC CATTGCGCCGCACCGCTGTGGACGCTGATGCGACCGCGGAGCCTATCCGCCAGCGACCAGTCCACGGCCGTCTTCAAAGC CTTGCAGCGCATCCCGACCATCGGGGAAGTCACCGCGCAGAAGCTGATGAAGAAGTTCGGCGACGGCTTCCTGGCCTCGA TGCTGGGCGACAACATCCACGAGTTCATCAACCTCATGGATGCCAAGGGCGAGCTGGTCTTCTCGGATCGTCAGGCGCAC CGCATGGAGCGGGCGATGGCGAACATGGAGTTCAGCTTCGGCGAAGGCGGCTACCAGCCGTCCGAGTTCGTCAAACGCTA CCTGCCGCAAGGCACGTTCGATTTGCTCATCGCCGACGAGGCGCACGAGTACAAGAATGGCGGCTCCGCACAGGGCCAAG CGATGGGGGTGTTGGCAGCCAAGGCACGCAAGACGCTGCTGCTCACCGGCACGCTGATGGGCGGCTACGGCGACGACCTG TTCCACCTGCTGTTCCGAGCCCTGCCTGGGCGAATGATCGAAGACGGCTACCGCCCGACCAAGAGCGGCAGCATGACCTC GGCCGCGATGGCGTTCATGAGGGATCACGGCATCCTCAAGGACATCTATTCCGAGAGCACGGGCACGGCGCACAAGACGG CCAAGGGCACCAAGGTCTCGGTGCGCACGGTCAAGGCGCCGGGCTTCGGCCCGAAGGGCGTGCTGCGTTGCGTCCTGCCG TTCACGGTATTCCTCAAGTTGAAGGACATCGGCGGCAACGTGCTGCCGTCCTACGACGAGGAGTTCCGCGAGGTGGCGAT GGACACGGCGCAAGCCGCGGCTTATCGCGATCTGTCGTTTCGTCTGACCTCGGCGCTGAAACAGGCGCTGGCCAAGCGCG ACACGACGCTGCTCGGTGTGGTCCTCAACGTGCTGCTGGCCTGGCCGGATTGCTGCTTCCGGTCGGAGACGGTGGTGCAC CCGCGCACACGCCAGACCTTGGCCTTCGTTCCGGCTCAGTTCAACGAGCTGGAGGTGATGCCCAAGGAGCGCGAGCTGAT CGAGATCTGCAAGCAGGAGAAGGCTGCGGGTCGCAAGACGCTGGTCTATTCGGTCTACACCGGCACGCGCGACACCACGT CGCGCTTGAAGGTGCTGCTGGAGCAGGAAGGCTTCAAGGTGGCGGTGCTGCGCGCAAGCGTGGATGCCTCCCGCCGCGAG GACTGGATCGCCGAGCAGTTGGACCGCGGCATCGACGTGCTGATCACGAACCCCGAGCTGGTGAAAACCGGCCTGGACCT GTTGGAGTTTCCGACGATCGTGTTCATGCAGTCGGGCTACAACGTCTACAGCCTGCAGCAGGCGGCCCGGCGCTCATGGC GCATCGGCCAGAAGCTGCCGGTTCGCGTGATCTACCTCGGCTACACGGCTTCCTCGCAGATGACCTGCCTGGGGCTGATG GCGCGAAAGATCATGGTCTCGCAGAGCACGTCGGGAGACGTGCCCGAGTCGGGATTGGACGTGCTGAACCAGGACGGTGA TTCCGTCGAGGTGGCACTGGCCCGGCAACTCGTCGCGGCCTGA Protein sequence : MSLDTDVVPAAHGTPIQGDLLEAAASPLAMSLQDFVAEFGDELLDSLNRANPPVYTGQARPHRQLVLASLKRKLFGAQAE VVHAVTELLADRGERAAIVNGEMGCGKTTVGIATAAVLHAEGYRRTLVLSPPHLVYKWRREIQETVAGAKVWVLNGPDTL VKLIKLREQLGVPVRGQEFYVLGRVRMRMGFHWKPVFNVRHTKHGEVGACPDCGQVITNLDGEPINPVELEAEDYRRRCS HCAAPLWTLMRPRSLSASDQSTAVFKALQRIPTIGEVTAQKLMKKFGDGFLASMLGDNIHEFINLMDAKGELVFSDRQAH RMERAMANMEFSFGEGGYQPSEFVKRYLPQGTFDLLIADEAHEYKNGGSAQGQAMGVLAAKARKTLLLTGTLMGGYGDDL FHLLFRALPGRMIEDGYRPTKSGSMTSAAMAFMRDHGILKDIYSESTGTAHKTAKGTKVSVRTVKAPGFGPKGVLRCVLP FTVFLKLKDIGGNVLPSYDEEFREVAMDTAQAAAYRDLSFRLTSALKQALAKRDTTLLGVVLNVLLAWPDCCFRSETVVH PRTRQTLAFVPAQFNELEVMPKERELIEICKQEKAAGRKTLVYSVYTGTRDTTSRLKVLLEQEGFKVAVLRASVDASRRE DWIAEQLDRGIDVLITNPELVKTGLDLLEFPTIVFMQSGYNVYSLQQAARRSWRIGQKLPVRVIYLGYTASSQMTCLGLM ARKIMVSQSTSGDVPESGLDVLNQDGDSVEVALARQLVAA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ORF C71 | AAN62165.1 | conserved hypothetical plasmid protein | Not tested | PAGI-2(C) | Protein | 0.0 | 90 |
| ORF SG81 | AAN62302.1 | conserved hypothetical plasmid protein | Not tested | PAGI-3(SG) | Protein | 0.0 | 88 |
| unnamed | ABR13404.1 | putative helicase | Not tested | PAGI-5 | Protein | 0.0 | 70 |
| RL063 | AAP84188.1 | plasmid related protein | Not tested | PAPI-1 | Protein | 0.0 | 70 |
| pph67 | CAI36108.1 | superfamily II DNA/RNA helicase | Not tested | PPHGI-1 | Protein | 0.0 | 69 |
| yea | AAW83099.1 | Yea | Not tested | GGI | Protein | 1e-173 | 50 |
