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Name : Alide2_0409 (Alide2_0409) Accession : YP_004386349.1 Strain : Alicycliphilus denitrificans K601 Genome accession: NC_015422 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : - Position : 425961 - 430085 bp Length : 4125 bp Strand : + Note : KEGG: aav:Aave_4531 DNA-directed RNA polymerase subunit beta; TIGRFAM: DNA-directed RNA polymerase, beta subunit, bacterial-type; PFAM: DNA-directed RNA polymerase, subunit 2, domain 6; RNA polymerase Rpb2, domain 2; RNA polymerase Rpb2, domain 3; RNA pol DNA sequence : ATGGCCCAAACATCCACGTACAGCTATACCGAACGCAAGCGGATTCGCAAGAGTTTCGGTAGCCGTGACAGCGTGCTCAA AGTACCTTATCTGCTGCAGATGCAGCGGGATGCCTATACGGCATTCCTGCAGGCGGAAACGCCTCCCCAGAAACGTACCA GCGAAGGCCTGCAGGCCGCGTTCAACGCCGCCTTCCCGATCGTCTCGCACAACGGCTTCGTGGAGATGAAGTTCGTGGAG TACAACCTGGCAAAGCCCGCGTTCGACGTGCGCGAGTGCCAGACCCGCGGTCTGACCTTCGCCTCGGCCGTGCGCGCCAA GGTGCAGCTCATCATCTACGACCGCGAGTCGTCCACGGCGCAGTCCAAGGTGGTCAAGGAAGTGAAGGAGCAGGAGGTCT ACATGGGCGAGGTTCCGCTCATGACCGACAAGGGCTCGTTCATCATCAACGGCACCGAGCGCGTGATCGTCTCGCAGCTG CACCGCTCGCCGGGTGTGTTCTTCGAGCATGACAAGGGCAAGACGCACAGCTCGGGCAAGCTGTTGTTCTCCGCGCGCAT CATCCCCTACCGCGGCTCCTGGCTGGACTTCGAGTTCGACCCCAAGGACATCCTGTACTTCCGCGTGGACCGTCGCCGCA AGATGCCGGTCACGATCCTGCTCAAGGCCATCGGCCTGAACCCGGAGTCGATCCTCGCGAACTTCTTCGTCAACGACAAC TTCCGCCTGATGGACAGCGGCGCGCAGATGGAGTTCGTGCCCGAGCGCCTGCGCGGCGAGGTGGCGCGCTTCGACATCAC CGACAAGTCCGGCAAGGTGGTGGTTGCCAAGGATAAGCGCGTCACGGCACGTCATACCCGTGAGCTGGAACAATCGGGCA CGACGCACATCAGCGTGCCGGAAGACTTCCTGTTGGGCCGCGTCGTCGCGCGCAACATCGTCGATCCCGACACGGGCGAG ATCCTGGCCAAGGCCAACGAAGAGCTGACGGAAGCGCTGCTCAAGAAGCTGCGTTCGGCAGGCGTGCAGGAGCTGCAGGC CATCTACACGAACGAGCTCGACCAGGGCGCCTACATTTCCCAGACGCTGCGCATCGACGAGACCGCGGACGAGTTCGCCG CCCGCGTGGCCATCTACCGCATGATGCGCCCCGGCGAGCCGCCGACGGAAGACGCCGTGCAGGCCCTGTTCCAGCGCCTG TTCTACAACCCGGACACCTACGACCTGTCGCGCGTGGGCCGCATGAAGTTCAACGCCAAGGTCGGCCGCAGCGAAGCCAC GGGCCCCATGGTGCTGGACAATGACGACATCCTGTCGGTGGTGAAGATCCTGGTCGATCTGCGCAACGGCAAGGGCGAGG TGGACGACATCGACCACCTGGGCAATCGCCGCGTGCGCTGCGTGGGCGAACTGGCCGAGAACCAGTACCGCACGGGCCTG GCGCGCATCGAAAAGGCCGTGAAGGAGCGCCTGGGCCAGGCCGAGCAGGAACCGCTGATGCCGCACGACCTGATCAACTC CAAGCCGATCTCCGCGGCCCTGAAGGAGTTCTTCGGCGCCTCGCAGCTGTCGCAGTTCATGGACCAGACCAACCCGCTGG CCGAGATCACGCACAAGCGCCGTGTCTCCGCCCTGGGCCCGGGCGGCCTGACGCGCGAGCGCGCGGGCTTCGAGGTGCGC GACGTGCACGTCACGCACTATGGCCGTGTGTGCCCGATCGAGACGCCGGAAGGCCCGAACATCGGCCTGATCAACTCGCT GGCCCTGTACGCGCGCCTGAACGAGTACGGCTTCATCGAGACGCCGTACCGCCGCGTGGTGGACGGCAAGGTGACGAGCG AGATCGACTACCTGTCGGCCATTGAAGAGGGCAAGTACATCATCGCCCAGGCCAACGCCGCGCTGGACGAGGAAGGGCGC CTTACGGGCGACCTAGTGTCGGCGCGCGAGCAGGGCGAATCCACCCTGGTATCCGCCGAACGCGTGCAGTACATGGACGT GTCGCCCGCGCAGATCGTGTCGGTGGCCGCATCGCTCGTGCCCTTCCTGGAGCACGACGATGCCAACCGCGCGCTGATGG GCGCCAACATGTCGCGCCAGGCCGTGCCCGTGCTGCGTCCCGAGAAGCCCATGGTGGGCACGGGCATCGAGCGCGTGGCG GCTGTGGACTCGGGCACCGTGGTGACGGCGCGCCGCGGCGGCGTGGTGGACTATGTGGATGCGACCCGCATCGTGGTGCG CGTGCATGATGCCGAGGCCGTGGCCGGCGAAGTGGGCGTGGACATCTACAACCTCATCAAGTACCAGCGCTCCAACCAGA ACACGAACATCCACCAGCGCCCCATCGTGAAGAAGGGCGATGTGCTGGCCAAGGGCGACGTGATCGCCGACGGCGCTTCG ACCGACCTGGGCGAGATCGCCATCGGCCAGAACATGCTGATCGCGTTCATGCCCTGGAACGGCTACAACTTCGAGGACTC GATCCTGATCAGCGAGCGCGTCGTGGCCGAAGACCGCTATACCTCGATCCACATCGAGGAACTCGTGGTGATGGCGCGCG ACACCAAGCTGGGCGCCGAGGAAATCACGCGCGACATCCCGAACCTGTCGGAGCAGCAGCTCAACCGCCTGGACGAGTCC GGCATCATCTACGTGGGCGCCGAAGTGCAGCCCGGCGACACGCTGGTCGGCAAGGTCACGCCCAAGGGCGAGACCACGCT CACGCCTGAAGAGAAGCTGCTGCGCGCCATCTTCGGCGAGAAGGCCTCGGACGTGAAGGACACCTCGCTGCGCGTGGACC AGGGCTCGTCCGGCACGGTGATCGACGTGCAGGTCTTCACGCGCGAAGGCATCCAGCGCGACAAGCGCGCGCAGCAGATC ATCGACGACGAGCTCAAGCGCTTCCGCCTGGACCTGAACGACCAGCTGCGCATCGTCGAGGCCGACGCGTTCGACCGTAT CGAGAAGCTGCTGGTGGGCAAGAAGGCCAATGGCGGCCCGCACAAGCTCGCCAAGGGCGCGACCATCGACAAGGAATACC TTGCCGGCGTGGAGAAGTTCCACTGGTTCGACATCCGCCCCGCCGACGAGGCCGTGGCCGCGCAGCTCGAATCCATGAAG AACGCGATGGAGCAGACGCGCCACAGCTTCGACCTAGCATTCGAGGAAAAGCGCAAGAAGCTTACGCAGGGCGACGAGCT GCCCGCGGGCGTGCTCAAGATGGTCAAGGTGTACCTGGCCGTCAAGCGCCGCCTGCAGCCCGGCGACAAGATGGCCGGCC GCCACGGCAACAAGGGCGTGGTCTCCAAGATCACGCCCGTGGAAGACATGCCGCACATGGCCGACGGCACGCCGGTCGAC ATCGTCCTGAACCCGCTGGGCGTGCCCTCGCGCATGAACATTGGCCAGGTGCTGGAAGTCCACCTGGGCTGGGCCGGCAA GGGCCTGGGCCAGCGCATCGGGGACATGCTGCGCGACCAGGCTAACGTTGCCGAGATGCGCAAGTTCCTCGGCGAGGTCT ACAACTCGCGTGGCCGCAAGGAAGACCTGAGTCAGCTCTCGGACGACGAGGTCATGAGCATGGCCGCCAACCTCACGGGC GGCGTGCCTTACGCCTCGCCGGTGTTCGACGGCGCTTCCGAGGCCGAGATCAAGGACATGCTCAAGCTTGCCTACCCGGA CGACATCAAGGAGCGCAAGGGCCTGACCGACACGCGCACCCAGGCCTGGCTCATCGACGGGCGCACGGGCGAGCGCTTCG AGCGCCCGACGACCATCGGCTACATGCACTACCTCAAGCTCCATCACCTGGTGGACGACAAGATGCACGCGCGCTCCACG GGCCCGTACTCGCTGGTCACGCAGCAGCCGCTGGGCGGCAAGGCCCAGTTCGGCGGCCAGCGTTTCGGCGAGATGGAAGT CTGGGCGCTGGAAGCCTACGGCGCCGCCTACGTGCTGCAGGAAATGCTGACCGTGAAGTCCGACGACGTGCAGGGCCGCA CCAAGGTGTACGAGAACATCGTCAAGGGCGAACACGCCATCGAAGCGGGCATGCCCGAGTCGTTCAATGTGCTGGTCAAG GAAATCCGCTCCCTGGGCCTGGACATTGAGCTCGAGCGCTCTTAA Protein sequence : MAQTSTYSYTERKRIRKSFGSRDSVLKVPYLLQMQRDAYTAFLQAETPPQKRTSEGLQAAFNAAFPIVSHNGFVEMKFVE YNLAKPAFDVRECQTRGLTFASAVRAKVQLIIYDRESSTAQSKVVKEVKEQEVYMGEVPLMTDKGSFIINGTERVIVSQL HRSPGVFFEHDKGKTHSSGKLLFSARIIPYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKAIGLNPESILANFFVNDN FRLMDSGAQMEFVPERLRGEVARFDITDKSGKVVVAKDKRVTARHTRELEQSGTTHISVPEDFLLGRVVARNIVDPDTGE ILAKANEELTEALLKKLRSAGVQELQAIYTNELDQGAYISQTLRIDETADEFAARVAIYRMMRPGEPPTEDAVQALFQRL FYNPDTYDLSRVGRMKFNAKVGRSEATGPMVLDNDDILSVVKILVDLRNGKGEVDDIDHLGNRRVRCVGELAENQYRTGL ARIEKAVKERLGQAEQEPLMPHDLINSKPISAALKEFFGASQLSQFMDQTNPLAEITHKRRVSALGPGGLTRERAGFEVR DVHVTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFIETPYRRVVDGKVTSEIDYLSAIEEGKYIIAQANAALDEEGR LTGDLVSAREQGESTLVSAERVQYMDVSPAQIVSVAASLVPFLEHDDANRALMGANMSRQAVPVLRPEKPMVGTGIERVA AVDSGTVVTARRGGVVDYVDATRIVVRVHDAEAVAGEVGVDIYNLIKYQRSNQNTNIHQRPIVKKGDVLAKGDVIADGAS TDLGEIAIGQNMLIAFMPWNGYNFEDSILISERVVAEDRYTSIHIEELVVMARDTKLGAEEITRDIPNLSEQQLNRLDES GIIYVGAEVQPGDTLVGKVTPKGETTLTPEEKLLRAIFGEKASDVKDTSLRVDQGSSGTVIDVQVFTREGIQRDKRAQQI IDDELKRFRLDLNDQLRIVEADAFDRIEKLLVGKKANGGPHKLAKGATIDKEYLAGVEKFHWFDIRPADEAVAAQLESMK NAMEQTRHSFDLAFEEKRKKLTQGDELPAGVLKMVKVYLAVKRRLQPGDKMAGRHGNKGVVSKITPVEDMPHMADGTPVD IVLNPLGVPSRMNIGQVLEVHLGWAGKGLGQRIGDMLRDQANVAEMRKFLGEVYNSRGRKEDLSQLSDDEVMSMAANLTG GVPYASPVFDGASEAEIKDMLKLAYPDDIKERKGLTDTRTQAWLIDGRTGERFERPTTIGYMHYLKLHHLVDDKMHARST GPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYVLQEMLTVKSDDVQGRTKVYENIVKGEHAIEAGMPESFNVLVK EIRSLGLDIELERS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 63 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 63 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Alide2_0409 | YP_004386349.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 77 |
| Alide2_0409 | YP_004386349.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 74 |
| Alide2_0409 | YP_004386349.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 71 |
| Alide2_0409 | YP_004386349.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 67 |
| Alide2_0409 | YP_004386349.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 64 |
| Alide2_0409 | YP_004386349.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 64 |
| Alide2_0409 | YP_004386349.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 64 |
| Alide2_0409 | YP_004386349.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 64 |
| Alide2_0409 | YP_004386349.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 64 |
| Alide2_0409 | YP_004386349.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 64 |
| Alide2_0409 | YP_004386349.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 63 |
| Alide2_0409 | YP_004386349.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 63 |
| Alide2_0409 | YP_004386349.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 63 |
| Alide2_0409 | YP_004386349.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 63 |
| Alide2_0409 | YP_004386349.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 63 |
| Alide2_0409 | YP_004386349.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 63 |
| Alide2_0409 | YP_004386349.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 63 |
| Alide2_0409 | YP_004386349.1 | DNA-directed RNA polymerase subunit beta | AM180355.1.gene120.p | Protein | 0.0 | 45 |
