Gene Information

Name : VAB18032_05110 (VAB18032_05110)
Accession : YP_004402748.1
Strain : Verrucosispora maris AB-18-032
Genome accession: NC_015434
Putative virulence/resistance : Virulence
Product : ATP-dependent chaperone ClpB
Function : -
COG functional category : O : Posttranslational modification, protein turnover, chaperones
COG ID : COG0542
EC number : -
Position : 122109 - 124700 bp
Length : 2592 bp
Strand : +
Note : COG0542 ATPases with chaperone activity, ATP-binding subunit

DNA sequence :
ATGAACACCGAACGCCTCACCACCCGCAGCCGCGAGACCATCACCGGCGCCGTCGCCCTGGCCAACCAGCGCGGGCACGC
CACCGTGGAGCCGTGGCACCTGCTGCTGTCGTTGCTCGACACCGAGGGTTCGACCGCTGCCGGCCTGCTGCGCGCCGTCG
GGGCCGATCCCGCCGAGCTGCGCCGAGTCACCCAGCGGGCCCTCGACGCGCTGCCCGCCGCCCGGGGTTCCAGCATCGCC
GAGCCGACCCTGGCCCGTGAGTTCGTCAACGCCATCGGTGCGGCCGAGCAGATCGCCCGCCCGCTCGGCGACGAGTACAC
CTCCACCGAGCACCTGCTGGCCGGGCTGGCCCGGGTCGGCGGTGCCGTCTCCGGTGCGCTGAAGGCCGCCGGTGCCACCG
AGGAGACGCTTGTCGCCGCCTTTCCGAAGGTGCGGGGTGGGGACCGCCGGGTCACCAGCGCCGACCCGGAGCAGACCTAC
CAGGCCCTCGCCAAATACGGCGTCGACCTGACCGCGAGCGCCCGCGACGGCAAGATCGACCCGGTGATCGGCCGGGACTC
CGAGATCCGTCGGGTGATCCAGGTGCTGTCCCGGCGTACCAAGAACAACCCGGTGCTGATCGGCGAACCGGGTGTCGGCA
AGACCGCCATCGTGGAGGGCCTGGCCCAGCGCATCGTCGCCGGAGACGTGCCGGAGTCGCTGCGCGACAAGAAGCTCGTC
TCGCTCGACCTCGGCGCGATGGTCGCCGGTGCGTCGTACCGGGGGCAGTTCGAGGAGCGGCTCAAGTCCGTCCTGGAGGA
GATCAAGAACTCCGACGGGCAGGTCATCACCTTCCTCGACGAACTGCACACCGTCGTCGGCGCCGGCAAGGGCGAGGGCT
CGATGGACGCCGGCAACATGCTCAAACCGATGCTGGCCCGCGGTGAGCTGCGGATGGTCGGTGCGACCACGCTCGACGAG
TACCGCGAGCACATCGAGAAGGACCCGGCCCTGGAGCGCCGCTTCCAGCCGGTGCTGGTCGGCGAGCCCACCGTCGAGGA
CACCATCGGCATCCTGCGCGGGCTCAAGGAACGCTACGAGGTGCATCACGGCGTACGCATCACCGACGCCGCACTGGTCG
CCGCCGCCGCGCTCTCCGACCGGTACATCACCGACCGGTTCCTGCCGGACAAGGCGATCGACCTGGTCGACGAGTCGGCG
TCCCGGCTCCGGATGGAGATCGACTCCCGGCCGGTCGAGGTGGACGAGATCGAGCGGGCGGTTCGCCGGCTGGAGATCGA
GGAGATGGCGCTGGCCAAGGAGCCGGACGCCGCCTCCGCCGAGCGCCTCGAACGGCTGCGCAAGGAGTTGGCCGACAAGC
GCGAGCAGCTCACCGCCCTGTCCGAGCGGTGGAAGCTGGAGAAGACCCACATCACCAAGCTCTCCACCGCCAAGGAGGAG
TTGGAGCGCCTCGGTGGCGAGGCCGAGCGGGCCGAGCGCGACGGCGAGCTGGAACGCGCCGCCGAGCTGCGCTACGGCCG
CATCCCCGCACTGAACAACGAGCTGAAGCAGGCGGCGGAGGAACTGGCCCGGCTCCAGGCCGACGGCGCGATGCTCAAGG
AGGAGGTCGGCGCCGACGACATCGCCGCCGTGGTCGCCTCCTGGACCGGCATCCCCGCCGGCCGACTGCTGGAGGGCGAG
ACCGCCAAGCTGCTGCGGATGGAGGATTCGCTGCGCGAGCGGGTCGTCGGCCAGGCCGAGGCCGTCGGCGCGGTCTCCGA
CGCGGTACGCCGCGCCCGGGCCGGCGTCGCCGACCCGGACCGCCCGACCGGCAGCTTCCTCTTCCTCGGCCCGACCGGCG
TCGGCAAGACCGAGCTGGCCAAGGCGCTCGCCGGGTTCCTCTTCGACGACGAGCGGGCCATGGTCCGCATCGACATGAGC
GAGTACGGCGAGAAGCACTCCGTGGCCCGCCTGGTCGGTGCCCCGCCCGGCTACGTCGGGTACGAGGAGGGTGGCCAGCT
CACCGAGGCGGTACGCCGCCGGCCGTACTCGGTGATCCTGCTCGACGAGGTGGAGAAGGCCCACCCGGACGTCTTCGACG
TCCTGCTCCAGGTGCTGGACGACGGCCGGCTCACCGACGGTCAGGGGCGTACGGTCGACTTCCGCAACGCCATCCTGATC
CTCACCTCGAACCTGGGATCGTCGGTGATCAGCGACCTGACCCTCGCCGAGGAACAGCGGCGTGAGGGTGTGCTCGCGGT
GGTCCGGTCGCACTTCAAGCCGGAGTTCCTCAACCGGCTCGACGACATCGTGGTCTTCGCCGCCCTCCAGGGCGACGACC
TGCGGGCCATCGTGGACATCCAGATCGCCCGGCTGCGCCGCCGGCTCGCGGACCGCCGGTTGACGCTTGACGTCACCGAC
GCCGCCCGCACCTGGCTCGCCGAGCACGGTTACGACCCGATCTACGGTGCCCGGCCGCTGCGTCGCTTGGTCCAGTCCGC
GATCGGCGACCAGCTCGCCAAGGCGCTGCTCGCCGGCAAGATTCGAGACGGCGACACCGTACGGGTCGACCTCGCCGACA
CCAAGGACGGCCTGTCGGTGACGGCCGCCTGA

Protein sequence :
MNTERLTTRSRETITGAVALANQRGHATVEPWHLLLSLLDTEGSTAAGLLRAVGADPAELRRVTQRALDALPAARGSSIA
EPTLAREFVNAIGAAEQIARPLGDEYTSTEHLLAGLARVGGAVSGALKAAGATEETLVAAFPKVRGGDRRVTSADPEQTY
QALAKYGVDLTASARDGKIDPVIGRDSEIRRVIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVAGDVPESLRDKKLV
SLDLGAMVAGASYRGQFEERLKSVLEEIKNSDGQVITFLDELHTVVGAGKGEGSMDAGNMLKPMLARGELRMVGATTLDE
YREHIEKDPALERRFQPVLVGEPTVEDTIGILRGLKERYEVHHGVRITDAALVAAAALSDRYITDRFLPDKAIDLVDESA
SRLRMEIDSRPVEVDEIERAVRRLEIEEMALAKEPDAASAERLERLRKELADKREQLTALSERWKLEKTHITKLSTAKEE
LERLGGEAERAERDGELERAAELRYGRIPALNNELKQAAEELARLQADGAMLKEEVGADDIAAVVASWTGIPAGRLLEGE
TAKLLRMEDSLRERVVGQAEAVGAVSDAVRRARAGVADPDRPTGSFLFLGPTGVGKTELAKALAGFLFDDERAMVRIDMS
EYGEKHSVARLVGAPPGYVGYEEGGQLTEAVRRRPYSVILLDEVEKAHPDVFDVLLQVLDDGRLTDGQGRTVDFRNAILI
LTSNLGSSVISDLTLAEEQRREGVLAVVRSHFKPEFLNRLDDIVVFAALQGDDLRAIVDIQIARLRRRLADRRLTLDVTD
AARTWLAEHGYDPIYGARPLRRLVQSAIGDQLAKALLAGKIRDGDTVRVDLADTKDGLSVTAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY0294 NP_454876.1 ClpB-like protein Not tested SPI-6 Protein 4e-94 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
VAB18032_05110 YP_004402748.1 ATP-dependent chaperone ClpB VFG2084 Protein 8e-97 43