Gene Information

Name : Krodi_2613 (Krodi_2613)
Accession : YP_004431857.1
Strain : Krokinobacter sp. 4H-3-7-5
Genome accession: NC_015496
Putative virulence/resistance : Virulence
Product : ATP-dependent chaperone ClpB
Function : -
COG functional category : O : Posttranslational modification, protein turnover, chaperones
COG ID : COG0542
EC number : -
Position : 2945765 - 2948371 bp
Length : 2607 bp
Strand : -
Note : TIGRFAM: ATP-dependent chaperone ClpB; PFAM: ATPase AAA-2 domain protein; AAA ATPase central domain protein; Clp domain protein; Clp ATPase-like; KEGG: zpr:ZPR_1215 chaperone ClpB; SMART: AAA ATPase

DNA sequence :
ATGAATATAAATAATTATACCATAAAATCACAGGAGGCCATCCAAAGAGCACAGCAAATTGCTCAGGAAATGGGCCACCA
GCAGATAGAAAATGAGCATATTTTTAAAGCAATCTTTGAAATAGATGAGCACGTTACACCATTCTTACTTCAAAAGCTTG
ATGTAAATATTCCGTTATTCCAGCAAGTTTTAGATAGTACGTTACAGAGCTATCCTAAAGTATCTGGTGGAGATATTGTA
CTAGGTCGCGAGGCAAATAAAGCACTCACGGAGGCTAGTATTATTGCTAAAAAAATGAACGATGAGTATGTCTCTATCGA
GCATTTGATACTCGCAATCTTTAGCACTAAAAGCAAAGTAGCTCAAATCTTAAAAGATCAAGGAGTGACAGAAAAGCATT
TACGCGCAGCGATTGACGAAGTACGTAAAGGAAATCGTGTAACTTCTCAAAGCGCTGAAGAAACCTATAATTCTTTAAAC
AAATACGCAAAAAACTTAAATGAACTTGCGCGTAATGGTAAACTAGATCCTGTAATAGGACGTGACGAAGAGATACGACG
CATATTACAAATCTTAACGCGTCGTACAAAGAACAATCCTATACTCGTAGGAGAGCCAGGTACTGGTAAAACAGCCATTG
CCGAAGGTCTTGCACATAGAATTGTAGATGGTGACATCCCAGAAAACCTACAGAACAAGCAAATATTTGCCCTCGATATG
GGTGCACTTATTGCTGGAGCAAAATTTAAAGGAGAGTTTGAAGAACGTCTTAAAGCGGTTATTAAAGAAGTAACAGAAAG
TGATGGCGATATCGTACTCTTTATAGATGAGATACACACACTGGTGGGAGCCGGTGGTGGTCAAGGCGCAATGGATGCGG
CAAACATCTTAAAACCTGCACTAGCCCGTGGCGAACTTCGCGCCATAGGTGCTACTACGCTTGATGAGTATCAAAAATAC
TTTGAAGCAGATAAGGCACTTGAACGTAGGTTCCAAAAAGTGGTGGTAGATGAGCCAGATACAGAAAGTGCTATTTCTAT
CCTTAGAGGTATTAAAGATAAGTACGAGACACATCACAAGGTGCGTATTAAGGATGATGCAATCATCGCAGCGGTAAAGT
TATCTCAACGCTATATTACAAGCAGATTTTTACCAGACAAGGCAATTGACCTTATGGATGAAGCTGCTGCAAAAATGCGT
ATGGAAATCAACTCTAAGCCAGAAGAGCTTGACGTATTAGACCGTCGTGTGATGCAGCTAGAGATTGAGATTGAGGCAAT
CAAGCGAGAGAAAGATGAAGATAAGCTCAAAAGCCTACGTGCAGATCTAGCAAACCTTAAGGAAGAACGCAATGATCTTA
ACGCACAGTGGCAATCTGAAAAGGACATTGTAGAGAGTGTACAGACTGCAAAGCAAGACATAGAAAACTATAAAATAGAA
GCAGAAATTGCCGAGCGAGAAGGTAATTATGGTCTTGTGGCAGAGCTACGCTATGGTAAAATAAAAGATGCTCAAGAGCA
CCTTGAGGAGCTACAAAAGGATCTTGCAAGTCAAGCAGATACTTCGCTTATTAAGGAAGAAGTAACCAGCGAAGACATTG
CAGAGGTAGTTGCAAAATGGACAGGAATCCCAGTGCAAAAAATGCTACAGGGAGAACGTGAGAAGTTACTTCAGCTAGAA
GACGAGCTGCACAAACGTGTGGTAGGACAACGAGAAGCTATTGTAGCAGTAAGTGATGCCGTACGACGCAGTCGTGCAGG
ATTGCAAGATCAGAAAAAACCAATTGGTTCGTTCTTATTTTTAGGAACAACCGGTGTAGGTAAAACAGAACTTGCAAAGG
CACTGGCAGAGTATCTCTTTGATGATGAGAATGCGATGACGCGCATAGATATGAGTGAGTATCAAGAGCGTCACAGTGTG
AGCCGTCTAGTGGGAGCGCCTCCAGGATATGTGGGATATGACGAAGGTGGCCAGCTTACGGAAGCCGTGCGACGTCGTCC
ATACTCTGTAGTTTTACTAGATGAGATTGAAAAAGCACACCCAGATACTTTTAACGTGTTATTACAAGTGCTTGATGAAG
GTAGACTTACAGATAACAAAGGCCGCACTGCCGACTTTAGAAATGCCATTATAATTATGACTTCAAATATGGGTAGTCAT
ATCATAAAAGAGCGTTTTGAGGCAATTCCAGATGTAGATGCTGCGATGGAGTCTGCAAAGGTTGACGTATTAGGTTTATT
AAAACAAAACATAAGACCAGAATTCTTAAATAGAATCGACGATATTGTGATGTTTAGTCCGCTTACGCGAAAGGATATTA
GGGATATTGTGAAGTTGCAGTTTAAAGGGATTCAAAAAATGCTCTCTCAACAGAACATTACCCTAGATGCTACAAAACAA
GCAATAGACTTTATCTCGGAAGCAGGTTTCCAGCCAGAATATGGTGCAAGACCTGTAAAACGAGCAATGCAGCGCGAGGT
GCTCAACCAGTTATCAAAAGAAATTTTGAGCGGTAAAGTTGCATCAGACAGTGTGATATTAGTAGATTCCTTTGACGACA
AACTCGTTTTTAGAAACGAAGGAGAACGCACAGGAGAAGAAGAATAA

Protein sequence :
MNINNYTIKSQEAIQRAQQIAQEMGHQQIENEHIFKAIFEIDEHVTPFLLQKLDVNIPLFQQVLDSTLQSYPKVSGGDIV
LGREANKALTEASIIAKKMNDEYVSIEHLILAIFSTKSKVAQILKDQGVTEKHLRAAIDEVRKGNRVTSQSAEETYNSLN
KYAKNLNELARNGKLDPVIGRDEEIRRILQILTRRTKNNPILVGEPGTGKTAIAEGLAHRIVDGDIPENLQNKQIFALDM
GALIAGAKFKGEFEERLKAVIKEVTESDGDIVLFIDEIHTLVGAGGGQGAMDAANILKPALARGELRAIGATTLDEYQKY
FEADKALERRFQKVVVDEPDTESAISILRGIKDKYETHHKVRIKDDAIIAAVKLSQRYITSRFLPDKAIDLMDEAAAKMR
MEINSKPEELDVLDRRVMQLEIEIEAIKREKDEDKLKSLRADLANLKEERNDLNAQWQSEKDIVESVQTAKQDIENYKIE
AEIAEREGNYGLVAELRYGKIKDAQEHLEELQKDLASQADTSLIKEEVTSEDIAEVVAKWTGIPVQKMLQGEREKLLQLE
DELHKRVVGQREAIVAVSDAVRRSRAGLQDQKKPIGSFLFLGTTGVGKTELAKALAEYLFDDENAMTRIDMSEYQERHSV
SRLVGAPPGYVGYDEGGQLTEAVRRRPYSVVLLDEIEKAHPDTFNVLLQVLDEGRLTDNKGRTADFRNAIIIMTSNMGSH
IIKERFEAIPDVDAAMESAKVDVLGLLKQNIRPEFLNRIDDIVMFSPLTRKDIRDIVKLQFKGIQKMLSQQNITLDATKQ
AIDFISEAGFQPEYGARPVKRAMQREVLNQLSKEILSGKVASDSVILVDSFDDKLVFRNEGERTGEEE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
aec27 YP_851418.1 ATPase Not tested PAI II APEC-O1 Protein 3e-97 41
aec27 AAQ96721.1 Aec27 Not tested AGI-1 Protein 2e-97 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Krodi_2613 YP_004431857.1 ATP-dependent chaperone ClpB VFG2076 Protein 9e-121 44
Krodi_2613 YP_004431857.1 ATP-dependent chaperone ClpB VFG2084 Protein 3e-106 43