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Name : Krodi_0364 (Krodi_0364) Accession : YP_004429618.1 Strain : Krokinobacter sp. 4H-3-7-5 Genome accession: NC_015496 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : - Position : 433771 - 437592 bp Length : 3822 bp Strand : - Note : KEGG: cat:CA2559_00025 DNA-directed RNA polymerase beta subunit; TIGRFAM: DNA-directed RNA polymerase, beta subunit; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase Rpb2 domain 3; RNA polymerase Rpb2 domain 2; RNA polymerase beta subunit; DNA-directed DNA sequence : ATGATGCAAGATGCAAAACAAGGAGAAAGAATCAGTTTCTCATCGGTAAAGAATAGACCTGATTATCCAGACTTTTTGGA TATTCAAGTAAAGTCTTTCCAAGATTTTTTCCAACTGGAAACAAAGTCTGATGAGAGAGGTGATGAGGGTCTTTATAATA CTTTTCTCGAGAACTTCCCAATTACAGATACTCGTAACAACTTTGTACTCGAGTTTTTAGATTATTTCGTTGACCCACCA AGGTACTCTATTCAAGAGTGTATTGAACGTGGTCTTACATATAGTGTGCCTTTAAAAGCACGTCTAAAATTATACTGTAC TGACGAAGAGCACGAGGATTTTGAAACTATTGTACAAGATGTATATCTAGGTACAATTCCATACATGACTCCTAGCGGAA CATTTGTGATCAATGGCGCAGAGCGTGTTGTTGTTTCTCAACTACACCGTTCACCTGGAGTTTTCTTTGGACAATCGTTC CACGCAAATGGAACAAAATTATATTCTGCCCGAGTAATTCCTTTTAAAGGATCTTGGATAGAATTTGCGACAGATATTAA TAGCGTTATGTACGCATATATCGATCGTAAAAAGAAATTACCTGTTACTACACTTTTCCGTGCAATCGGTTTTGAAAGAG ATAAAGATATCCTTGAAATCTTTGACCTTGCAGAAGAAGTAAAAGTTTCTAAAACAGGATTAAAAAAATATTTAGGTCGT AAGCTTGCTGCGCGTGTTCTTAACACATGGCATGAAGACTTCGTAGATGAAGATACTGGTGAAGTAGTTTCTATCGAGCG TAACGAGATTGTACTTGACCGTGATACCGTATTAGAAAAAGAGCATGTAGAAGAAATTCTTGAAGCTGGAGCTAAGACTG TATTACTTCACAAAGAAGATAATCAGCAAGCAGATTATGCGATTATCCATAATACACTACAAAAGGATCCAACAAACTCA GAAAAAGAGGCTGTTGAACATATCTATAGACAACTACGTAATGCTGAGCCGCCAGATGAGGAAACAGCACGTGGTATTAT TGATAAATTATTCTTCTCAGACCAACGCTATAACTTAGGTGAAGTAGGTCGTTACAGAATGAATAAAAAACTAGGTCTTG ATATTGAGATGGATAAGCAAGTGCTTACTAAGCTTGATATTATTACCATTATTAAGTATTTAATTGAGTTGATCAATGCA AAAGCAGAGATTGATGATATTGATCACTTATCAAACCGTCGTGTACGTACAGTTGGGGAGCAATTATCTGCACAATTTGG TGTAGGTCTTGCACGTATGGCTCGTACTATTCGTGAGCGTATGAACGTTCGTGATAACGAAGTTTTTACCCCTATTGACT TGATTAATGCAAAGACATTGTCTTCTGTTATTAATTCTTTCTTTGGAACAAACCAGTTATCACAATTTATGGATCAAACC AATCCTCTTGCAGAGATAACGCACAAGCGTCGTCTTTCTGCTCTTGGACCTGGAGGTCTATCTCGTGAGCGTGCTGGATT TGAGGTACGTGATGTTCACTATACACACTACGGAAGACTATGTCCAATTGAAACACCAGAGGGACCAAACATTGGTCTTA TTTCATCTCTTGCAGTATATGCAAAGGTGAATAACATGGGATTCATTGAGACTCCATATAGAAAAGTAGAAAACGGTAAA ATCGATCTAAAATCTGAACCACTTTATTTAAGTGCAGAGGAGGAAGAAGGGATGTTAATTGCACAAGCAAACAACCCGAT GGATGATAGCGGGGCAATTACTGAAGAAAAAGTAATTGCACGTATGGAAGGAGATTTTCCAGTTGTAGATCCTGATACCG TACACTATGCAGATGTCTCTCCTAACCAGATTGCTTCTATATCTGCATCTCTTATTCCATTCTTGGAGCATGATGATGCA AACCGTGCATTGATGGGATCAAACATGATGCGCCAGGCAGTGCCACTTATTATGGCAGATGCGCCTATCGTGGGAACAGG TCTGGAACGTCAAGTAGCTACAGATTCTAGAGTACTTATTAACGCAGAAGGTGCGGGTACTGTTGAGTATGTTGATGCAA ACATGATTACTATCAAATATGATCGTACGGAAGATGAGCGTCTAGTTAGTTTTGACGAAGATTCTAAATCATATAACCTT ATTAAGTTCCGTAAAACGAACCAAGGAACAAATATCAACTTGAAGCCTATTGTAAAAGTAGGTGATAGAGTAGAAAAGGG TCAAGTATTATGTCAAGGGTATGCTACCGAGAAAGGGGAGCTTGCACTAGGACGTAACATGAAGGTTGCCTTCATGCCTT GGAAAGGATATAACTTTGAGGATGCGATCGTAATATCTGAAAAGGTAGTACGTGATGATATCTTTACTTCTATTCACATT GATGAGTATTCTCTTGATGTGCGTGATACTAAGTTAGGAAACGAAGAGCTTACTAATGATATCCCTAACGTTTCTGAGGA AGCTACTAAGGATCTTGATGAGCACGGAATGATCCGTATAGGAGCAGAGGTAAAACCTGGAGATATATTAATAGGTAAGA TTACTCCAAAAGGAGAATCTGATCCTACTCCAGAAGAAAAACTTTTACGTGCAATCTTTGGAGACAAAGCTGGTGATGTA AAAGATGCTTCTCTTAAAGCTTCACCTTCTTTACATGGTGTGGTTATCAATAAGAAGTTGTTTGCAAGAGCAATAAAAGA TAAGCGCAAGCGTGCAAAGGATAAAGAAGATATCGCTGTTCTTGAGAATGAGTATGATGATAAGTTTGATGATTTACAAG CTGTAGTAATTGAAAAATTATTTAAGCTAGTAAACGGTAAAACTGCTCAAGGTGTTATGAATGATTTAGGTGAGGAAGTT CTTCCTAAAGGAAAGAAATTCACTCTTAAGATGCTTAACTCTGTAGAAGATTACACGCACCTTACGCAAGGTACTTGGAC TACAGACGATAAGACTAATACACTTATAGCAGATTTATTACATAACTATAAGATTAAAGAAAACGATCTACAAGGAAACT TACGTCGTGAGAAATTTACAATTTCTGTAGGAGATGAATTACCAGCTGGTATTATCAAACTTGCAAAAGTGTACATTGCC AAAAAACGTAAGCTTAAAGTAGGTGATAAAATGGCAGGACGTCACGGTAACAAAGGTATCGTTGCTCGTATCGTTCGTCA AGAAGATATGCCATTCCTTGAGGATGGAACTCCAGTAGATATCGTTCTTAACCCACTTGGTGTACCATCTCGTATGAACA TCGGGCAGATTTATGAAACGGTACTAGGATGGGCTGGTCAAAAATTAGGAAGAACGTATGCGACGCCTATTTTTGATGGA GCTACATTAGATCAGATTAATGCACTTACTGATGAGGCGGGTATTCCACGTTTTGGACATACTTACTTATATGATGGAGG TACGGGAGATCGTTTTGATCAACCAGCAACAGTAGGAGTTATCTATATGCTTAAACTAGGACACATGGTAGATGATAAGA TGCACGCGCGTTCTATCGGACCATACTCTCTTATTACGCAGCAACCTCTTGGAGGTAAGGCGCAGTTTGGAGGTCAGCGT TTTGGTGAAATGGAGGTTTGGGCTCTTGAGGCATATGGAGCTTCGGCAACATTGCGTGAGATCTTAACTGTAAAATCTGA TGACGTGATTGGTCGTGCTAAGACGTATGAAAGTATTGTAAAAGGAGAGCCTATGCCAGAGCCGGGACTTCCTGAATCTT TCAACGTATTGATGCATGAGCTTAAAGGACTGGGACTAGACATTCGTCTAGAGAATAAGTAA Protein sequence : MMQDAKQGERISFSSVKNRPDYPDFLDIQVKSFQDFFQLETKSDERGDEGLYNTFLENFPITDTRNNFVLEFLDYFVDPP RYSIQECIERGLTYSVPLKARLKLYCTDEEHEDFETIVQDVYLGTIPYMTPSGTFVINGAERVVVSQLHRSPGVFFGQSF HANGTKLYSARVIPFKGSWIEFATDINSVMYAYIDRKKKLPVTTLFRAIGFERDKDILEIFDLAEEVKVSKTGLKKYLGR KLAARVLNTWHEDFVDEDTGEVVSIERNEIVLDRDTVLEKEHVEEILEAGAKTVLLHKEDNQQADYAIIHNTLQKDPTNS EKEAVEHIYRQLRNAEPPDEETARGIIDKLFFSDQRYNLGEVGRYRMNKKLGLDIEMDKQVLTKLDIITIIKYLIELINA KAEIDDIDHLSNRRVRTVGEQLSAQFGVGLARMARTIRERMNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQT NPLAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLAVYAKVNNMGFIETPYRKVENGK IDLKSEPLYLSAEEEEGMLIAQANNPMDDSGAITEEKVIARMEGDFPVVDPDTVHYADVSPNQIASISASLIPFLEHDDA NRALMGSNMMRQAVPLIMADAPIVGTGLERQVATDSRVLINAEGAGTVEYVDANMITIKYDRTEDERLVSFDEDSKSYNL IKFRKTNQGTNINLKPIVKVGDRVEKGQVLCQGYATEKGELALGRNMKVAFMPWKGYNFEDAIVISEKVVRDDIFTSIHI DEYSLDVRDTKLGNEELTNDIPNVSEEATKDLDEHGMIRIGAEVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDV KDASLKASPSLHGVVINKKLFARAIKDKRKRAKDKEDIAVLENEYDDKFDDLQAVVIEKLFKLVNGKTAQGVMNDLGEEV LPKGKKFTLKMLNSVEDYTHLTQGTWTTDDKTNTLIADLLHNYKIKENDLQGNLRREKFTISVGDELPAGIIKLAKVYIA KKRKLKVGDKMAGRHGNKGIVARIVRQEDMPFLEDGTPVDIVLNPLGVPSRMNIGQIYETVLGWAGQKLGRTYATPIFDG ATLDQINALTDEAGIPRFGHTYLYDGGTGDRFDQPATVGVIYMLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQR FGEMEVWALEAYGASATLREILTVKSDDVIGRAKTYESIVKGEPMPEPGLPESFNVLMHELKGLGLDIRLENK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 46 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 46 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Krodi_0364 | YP_004429618.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 47 |
| Krodi_0364 | YP_004429618.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 46 |
| Krodi_0364 | YP_004429618.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 46 |
| Krodi_0364 | YP_004429618.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 46 |
| Krodi_0364 | YP_004429618.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 46 |
| Krodi_0364 | YP_004429618.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 46 |
| Krodi_0364 | YP_004429618.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 46 |
| Krodi_0364 | YP_004429618.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 46 |
| Krodi_0364 | YP_004429618.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 46 |
| Krodi_0364 | YP_004429618.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 46 |
| Krodi_0364 | YP_004429618.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 46 |
| Krodi_0364 | YP_004429618.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 46 |
| Krodi_0364 | YP_004429618.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 46 |
| Krodi_0364 | YP_004429618.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 45 |
| Krodi_0364 | YP_004429618.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 45 |
| Krodi_0364 | YP_004429618.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 45 |
| Krodi_0364 | YP_004429618.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 45 |
