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Name : Glaag_0670 (Glaag_0670) Accession : YP_004432901.1 Strain : Glaciecola sp. 4H-3-7+YE-5 Genome accession: NC_015497 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : - Position : 754699 - 758727 bp Length : 4029 bp Strand : + Note : KEGG: pat:Patl_0598 DNA-directed RNA polymerase subunit beta; TIGRFAM: DNA-directed RNA polymerase, beta subunit; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase Rpb2 domain 3; RNA polymerase beta subunit; RNA polymerase Rpb2 domain 2; DNA-directed RNA DNA sequence : ATGGTTTACTCTTATAGCGAAAAGAAACGTATCCGTAAGGATTTTGGCAAACGCCCACAGGTATTGGAAATACCGTATCT ACTTTCAATCCAGCTAGATTCTTTTAAAAAGTTTATTGACCTTGACGTCGATGGTCAGCATGGACTGGAAGCAGCATTTC GATCAGTTTTCCCAATAAAAAGTTACTCTGGTAACGCAGAATTACAGTACGTAAGTTACCGTTTAGGTGAGCCCGTATTT GACGTAAAAGAATGTCAAATCCGTGGTGTTACCTTTTCAGCGCCTTTGCGTGTTAAGTTGCGTTTAGTGTTGTTCGATCG TGAAGCAGCACCGGGCACAGTAAAAGACATCAAAGAGCAAGAAGTTTACATGGGCGAAATTCCGCTCATGACTGAAAATG GAACTTTCGTCATTAACGGTACTGAGCGAGTCATCGTATCTCAGTTACACCGTTCGCCAGGCGTATTCTTTGATCACGAT AAAGGTAAAACTCACTCATCAGGTAAAGTGTTATATAACGCCCGCGTTATTCCTTACCGTGGTTCGTGGTTAGACTTTGA ATTTGACCCTAAAGATAACCTTTATGTTCGTATAGATAGACGCCGCAAATTGCCCGCGACTATCATGCTACGTGCATTAG AAATTCCTACCGAAGAAATTCTTGGTATGTTCTTCGAGAAGAACCAAGTACGTATCGACGGTAATCGTTTCATGTCTGAT ATCGTGCCAGATCGCCTTCGTGGTGAAACTGCGCAATTCGATATTCTAGACTCGGATGGCAATGTGCTTGTAGAAGCAGG CCGTCGTATTTCAGCTCGTCATACCCGTGCACTTGAAAAAGCCGGTATCGTTGAACTAGAAGTACCAGCTGAATACCTAG TTGGCCGAGTATTTGCGTGTGATTACGTGGATCAAGAAACCGGTGAACTCGTTGTAGCTGCTAACGATATATTGACGCTA GAAAATGTATTGGCTCTGAAAGAAGCTGGATATACAACGTTTGAAACTTTGTACATCAACGAGCTTGATCACGGTGCTTA TATCTCTGATACCTTGCGCATTGATAGTTCAACTAACCGCTTAGAAGCCTTGGTTGAAATTTATCGTATGATGCGTCCTG GTGAGCCGCCTACTAAGGATGCTGCTGAGACATTATTCCAGAACTTGTTCTTCTCAGACGATCGTTATGATCTATCGTCT GTTGGACGTATGAAGTTCAACCGTCGTTTAGGTCGTGAAACATCAATCGGTGCTGGTACATTAGATAAAGACGACATCGT TGACGTAATGAAGCAACTGATCACTATTCGTGACGGTAAAGACGACGTGGATGATATCGATCACTTGGGTAACCGTCGTA TTCGTTCTGTTGGCGAAATGGCTGAAAACCAATTCCGTGTTGGTCTAGTGCGTGTTGAGCGTGCCGTTAAGGAACGTTTA AGCTTAGGCGATTTAGATGCGGTTATGCCTCAAGACTTGATTAACGCTAAGCCTATTTCGGCTGCGGTTAAAGAGTTCTT TGGTTCAAGCCAATTGTCACAGTTTATGGATCAGAACAACCCGTTGTCTGAAGTTACCCATAAGCGTCGTATTTCAGCCT TAGGCCCAGGCGGTCTAACACGTGAACGTGCTGGCTTTGAAGTACGAGATGTACACCCGACTCACTATGGTCGTGTATGT CCAATTGAAACACCTGAGGGACCAAACATCGGTTTGATCAACTCACTGGCGAGCTTTGCTCGTACAAATGACTTTGGTTT CCTTGAAACGCCATACCGAAAAATTGTTGACGGTGTAGTAACTGACGAAATCGATTACTTATCAGCAATCGAAGAAGGTC AATTCTCAATCGCACAGGCTAACGTTGCTCTTGATGAGAACGGCCGCCTTGCTGATGATTTGATCCCTTGTCGTCACCGC GGTGAAACGACATTGAAAGAAAGCTCTGAGATCACCTACATGGATGTATCTCCGCAGCAGATCGTTTCAATCGCTGCCAG CATTATCCCGTTCCTAGAACACGATGATGCTAACCGAGCTTTGATGGGTGCAAACATGCAACGTCAAGCAGTACCAACGC TTATCGCTGATAAGCCTCTTGTTGGTACCGGTATGGAAAAAACAGTTGCCGTCGATTCTGGCGTTACTGTTGTTGCTAAA CGTGGTGGACGAGTCGACTACGTAGATGCAAGCCGTATTGTTATAAAAGTTAATGAAGAAGAAACTGTTGCCGGCGAAGC GGGCATCGATATCTACAACTTAACTAAGTATACCCGTTCTAACCAGAACACCTGTATCAATCAGCGTCCTACGTGTAACG TTGGTGAGCCGATTGTTGCTGGTGACGTACTGGCTGACGGCCCATCTACTGATTTGGGTGAGCTTGCACTAGGGCAAAAT ATGCGTATCGCATTCATGCCTTGGAACGGTTACAACTTCGAAGATTCAATCTTGATCTCTGAGCGCGTTGCTATGGAAGA TCGTTTCACCACAATTCATATTCAAGAATTGAGCTGTGTGGCACGTGATACCAAGTTAGGGCCCGAAGAAATCAGCTCTG ATATTCCGAACGTAGGCGAATCTGCGTTAGGTAAATTAGATGAATCAGGTGTTGTTTACATCGGTGCTGAAGTTAAAGGT GGCGACATCCTAGTGGGTAAAGTTACTCCTAAAGGTGAAACGCAACTAACGCCAGAAGAGAAACTTTTACGAGCTATCTT CGGTGAAAAAGCATCAGACGTTAAAGATACTTCGTTGCGTGTGCCTAATAGCGTTCGCGGTACCGTAATTGACGTACAAG TATTTACTCGTGATGGCGTAGAAAAAGATAAGCGTGCACTTGAAATTGAAGGCATGCAGTTACGTCAAGTGAAGAAAGAT TTATCAGACGAATTCAATATTCTTGCTGATGGTATCTTCGCTCGTGCTAAAAACTTGTTGGTTAAATCAGGTATCGAAGA GTCTCGTTTAGAGTCTGCTCAACGCGAAAAATGGTTCGACCTAACCTTAGCTGATGATGACGCGCAAACAGAACTTGATC AGATTGCTGAACAGTTTGTTGAAATTAAAGCTGATTTTGATAAGAAGTTTGAAATTAAGCGTCGCAAGATCACTCAAGGC GATGATCTTCAACCAGGCGTTCTTAAAATCGTTAAGGTTTACTTGGCCGTTAAACGTCAAATTCAACCTGGTGATAAGAT GGCTGGTCGTCACGGTAACAAAGGTGTTATTTCAACCATTAAACCCGTTGAAGACATGCCTTACGATGTAAACGGTACGC CGGTAGACATCGTATTGAACCCGTTGGGTGTACCGTCACGTATGAACATCGGTCAAATCCTTGAGACTCACCTTGGTATG GCTGCACATGGTATCGGTGTGAAAATCGACCGCATGCTCAAAGAGCATGAAGAGATGGCTAAGCTACGTGGCTTCCTTAA AGAAGTTTACGGCGCCGGCACAACTGACCAAGAAGTGGATCTTGATAGCTTCAGCGATGACGAAATTACTCGTCTTGCAG ACAACTTGCGTAAAGGTGTGCCTATGGCAACACCAGTATTTGATGGTGCTACTGAAGCTGAAATCAAACATATGCTTACG CTTGCTGATCTTCCTGAAAGTGGACAAATCGCTTTGTTTGACGGCCGTACAGGACGTGAATTTGAACGTCCAGTAACTGT TGGCTACATGTATATGTTGAAACTGAATCACTTGGTTGATGACAAAATGCATGCTCGTTCAACTGGTTCTTACAGCTTGG TTACACAGCAACCGTTGGGTGGTAAAGCTCAATTCGGTGGTCAGCGCTTCGGTGAGATGGAAGTATGGGCACTGGAAGCA TACGGTGCTGCTTATACCTTGCAAGAAATGTTGACAGTGAAATCTGATGACGTGAATGGTCGTACTAAGATGTATAAAAA CATCGTCGACGGCGACCATCGCATGGAACCTGGTATGCCTGAATCATTCAACGTATTGTTGAAAGAGATTCGCTCACTGG GTATCAACATCGAGCTGGAAGAACAATAA Protein sequence : MVYSYSEKKRIRKDFGKRPQVLEIPYLLSIQLDSFKKFIDLDVDGQHGLEAAFRSVFPIKSYSGNAELQYVSYRLGEPVF DVKECQIRGVTFSAPLRVKLRLVLFDREAAPGTVKDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHD KGKTHSSGKVLYNARVIPYRGSWLDFEFDPKDNLYVRIDRRRKLPATIMLRALEIPTEEILGMFFEKNQVRIDGNRFMSD IVPDRLRGETAQFDILDSDGNVLVEAGRRISARHTRALEKAGIVELEVPAEYLVGRVFACDYVDQETGELVVAANDILTL ENVLALKEAGYTTFETLYINELDHGAYISDTLRIDSSTNRLEALVEIYRMMRPGEPPTKDAAETLFQNLFFSDDRYDLSS VGRMKFNRRLGRETSIGAGTLDKDDIVDVMKQLITIRDGKDDVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL SLGDLDAVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVC PIETPEGPNIGLINSLASFARTNDFGFLETPYRKIVDGVVTDEIDYLSAIEEGQFSIAQANVALDENGRLADDLIPCRHR GETTLKESSEITYMDVSPQQIVSIAASIIPFLEHDDANRALMGANMQRQAVPTLIADKPLVGTGMEKTVAVDSGVTVVAK RGGRVDYVDASRIVIKVNEEETVAGEAGIDIYNLTKYTRSNQNTCINQRPTCNVGEPIVAGDVLADGPSTDLGELALGQN MRIAFMPWNGYNFEDSILISERVAMEDRFTTIHIQELSCVARDTKLGPEEISSDIPNVGESALGKLDESGVVYIGAEVKG GDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPNSVRGTVIDVQVFTRDGVEKDKRALEIEGMQLRQVKKD LSDEFNILADGIFARAKNLLVKSGIEESRLESAQREKWFDLTLADDDAQTELDQIAEQFVEIKADFDKKFEIKRRKITQG DDLQPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISTIKPVEDMPYDVNGTPVDIVLNPLGVPSRMNIGQILETHLGM AAHGIGVKIDRMLKEHEEMAKLRGFLKEVYGAGTTDQEVDLDSFSDDEITRLADNLRKGVPMATPVFDGATEAEIKHMLT LADLPESGQIALFDGRTGREFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEA YGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMPESFNVLLKEIRSLGINIELEEQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 69 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 69 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Glaag_0670 | YP_004432901.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 80 |
| Glaag_0670 | YP_004432901.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 80 |
| Glaag_0670 | YP_004432901.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 80 |
| Glaag_0670 | YP_004432901.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 79 |
| Glaag_0670 | YP_004432901.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 79 |
| Glaag_0670 | YP_004432901.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 79 |
| Glaag_0670 | YP_004432901.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 72 |
| Glaag_0670 | YP_004432901.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 69 |
| Glaag_0670 | YP_004432901.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 69 |
| Glaag_0670 | YP_004432901.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 69 |
| Glaag_0670 | YP_004432901.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 69 |
| Glaag_0670 | YP_004432901.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 69 |
| Glaag_0670 | YP_004432901.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 69 |
| Glaag_0670 | YP_004432901.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 69 |
| Glaag_0670 | YP_004432901.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 66 |
| Glaag_0670 | YP_004432901.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 65 |
| Glaag_0670 | YP_004432901.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 63 |
| Glaag_0670 | YP_004432901.1 | DNA-directed RNA polymerase subunit beta | NC_012469.1.7686402. | Protein | 0.0 | 46 |
