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Name : Poras_0738 (Poras_0738) Accession : YP_004441853.1 Strain : Porphyromonas asaccharolytica DSM 20707 Genome accession: NC_015501 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : - Position : 922499 - 926341 bp Length : 3843 bp Strand : - Note : COGs: COG0085 DNA-directed RNA polymerase beta subunit/140 kD subunit; HAMAP: DNA-directed RNA polymerase subunit beta; InterProIPR010243:IPR007644:IPR007642:IPR007645:IPR 019462:IPR007120:IPR007641; KEGG: pgn:PGN_1571 DNA-directed RNA polymerase subunit DNA sequence : ATGGCATCCAAACCAACTAATACTAGAAAGAGCTTTGCATCTATTGCTCATCCAATGGAGTACCCTGACTTCTTGGAGGT GCAGCTCAAATCTTTTCAGGACTTCTTTCAGCTCAACACTCCTGCCGAGAGTAGAAAGAAAGAGGGATTATTTAAAGTCT TCTCTGAGAACTTCCCCATCGAAGACACTCGCAACAACTTCAAGCTCCTATTTGAAGACTACTTCGTAGATCCTCCTAAG TATTCGATAGAGGAGTGCTTGCGCCGTGGTCTGACCTATAGTGTCCCCTTGAGGGCTAAGCTCAAGCTCACCTGTGAAGA CCCCGAGCACGAAGACTTTGAGTCTACCGTACAGGACGTTTTCCTGGGCTCTATCCCCTATATGACACCTGCGGGTACGT TTGTCATCAATGGTGCGGAGAGAGTAGTCGTATCTCAGCTACACCGCTCACCAGGCGTCTTCTTTGGATCCAGTCTACAT AACAACGGGACGAGGCTATACTCGGCTCGTATCATCCCATTCAAGGGTTCTTGGATTGAGTTTGCTACTGATACGAACAA CGAGCTATACGCTTACATCGACCGTAAGAAGAAGCTCCCCATCACGACCCTCCTACGTGCCATCGGCTATGAGACAGACA AAGACATCCTTGATCTCTTTGGCATCGCTGAGGAGATCCCTGTCACGCTAGAGTCACTACAAGCGAACTATGGGCGACAG CTAGCTGCCTCAGTCATACTAAAGTACTACGATGAGGAGAGCGAGGAGGAGACAGGAGAGACTGAGACCTTCGCCCGATA CAACACGCTCGTAGAGCAAAATGCTATCCTAGACGAAGACAACGCTCAGGTCATCCTAGAGAATGGTATCGAGACCATCC TGCTACGTCGTGACTTAGCCACATCCGATCAAGAGTCTACAGACCAAGAGGTCATGGACTACTCGATCATCTTCAACACG CTCAAGCGTGACTCAGCCAATTCTGAGCAAGCTGCCTACAATTTCATCTATAACCTCCTGCGCAACTCTACTCCACCCGA TGATCAGAGTGCTAAGGAGATCTTCAACAACATCTTTTTCTCAGAGAAGCGTTATGATCTAGGCGATGTAGGGCGCTACA AGATCAATAGCAAGCTAGGACTAGACATAGATCCCGACGTCAAGATCCTCACAGCTGAGGATATCGTTGCGATCATACGT CACTTGATCAAGCTCGTCAATGGTAAGGCTCCAGTCGATGATATCGATCACCTATCGAATCGTCGTGTCAGAACCGTCGG AGAGCAACTATACAACCAGTTTAGTATAGGACTGAGTCGTATGGCTCGTACGGTCAAGGAGCGTATGAACGTACGTGACA GTGAAGTCTTCACACCCGTCGATCTAGTCAACTCCAAGACAATCGCATCGGTTGTCAACAGCTTCTTTGGGACCAACGCG CTCTCACAGTTTATGGATCAGCAGAATCCACTCTCTGAGATCACGCATAAGCGCCGTCTATCGGCACTAGGTCCAGGCGG TCTGACTCGAGATCGTGCTGGCTTTGAGGTGCGAGACGTACATTACACCCATTACGGTCGTCTCTGCCCTATCGAGACGC CTGAGGGTCCAAACATTGGACTTATCTCCTCGCTATGCGTCTACGCTAAGATCAACGAACTAGGATTCATCACAACTCCT TATCGTAATGTCAAGGATGGTACTGTAGACTTTGAAGACTCCAAGCTAGCCTACTTTACCGCTGAGGAAGAGGAGGACAA GACAGTGGCTCAGGGCAACGCACCTCTAGACGATGATGGACACTTCATCCGCTCGCGTGTCAAGGCGCGCTATGGCGCAG ACTTCCCCGTGGTGGAGCCTGAGGAGGTAGATCTGATGGACGTCTCTCCGACGCAGATCGCTTCGATTGCAGCTTCGCTC ATTCCATTCCTCGAGCACGATGATGCAAACCGTGCTCTCATGGGATCTAACATGATGCGTCAGGCTGTACCTCTACTAAC ACCCGAGGCTCCTATCGTAGGCACGGGCATCGAGCGCAGACTAGTCTCAGACTCTCGTACTCAGATCGAGGCTGCGGGCG ATGGCGTAGTCGTTTATGTCGACGCCACCAAGATCGTGGTCGACTATGACCGCACAGAGGAGGAGGAGCTTGTCAGCTTC GAGCCCTCAGAGGTTACATATAGTCTTCCCAAGTATCGTAAGACCAATCAGTCTACAACGATAGATCTAAGCCCCATCTG TCGCAAGGGAGACCGAGTCGTCAAGGGACAAATACTCTCCGAGGGCTTCTCCACACAAGATGGTGAGTTAGCACTCGGCC GCAACATTTTGGCCGCTTACATGCCTTGGAAGGGGTACAACTACGAGGATGCGATCGTGCTCAACGAACGTGTCGTCTCA GAGGATCTCTTCACTTCTATACATGTCGATGAGTACTCACTCGACGTACGTGAGACGAAGCGTGGTATGGAGGAGTTTAC AGCAGACATCCCCAACGTAAGTGAGGAAGCTACCAAAGACCTCGATGCCAACGGTATCGTTCGTGTCGGTGCTCGCATTG TCCCAGGCGACATCCTAGTAGGTAAGATTACACCAAAGGGTGAGTCTGACCCCACTCCTGAGGAGAAGCTCCTCTTAGCC ATCTTTGGCGACAAGGCAGGTGATGTCAAGGACGCTTCGCTCAAGGCTTCCCCCTCGCTCAAGGGTGTCGTCATCGACAC GAAGCTTTACTCACGAGCCAATCGTAAGGGAGGTATATCAGCTACGCGCAAGATCACACAGCGCTATGAAGAGGAGCTCT CCAAGCTTCAAGCTGCACTCAAGGAGGAGCTAGTCTCCAAGCTTCAGATCATACTCAAGAAGCACAAGACCACGGCAACG GACTTCGTCGACTACATCGGTGTCGTCAAGGTCAAGGCTGGTACACGCATCTCCAAGTCTCTGCTCCTCGAACTAGACTA CAATGATCTGAGAATGTCTGACTGGACCAATGACGAGCATACTAACGAACTTGTCAAGCAGACGATCGCTAACTATATCA AGAAGGACAAGATCACGATTGCAGAGGTTAATAGGCGCAAGCTCGATGAGACTCTCGGTGATGAGTTGCCTTCAGGTATC ATCCAGACCGCTAAGATCTTGATCGCTAAGAAGCGCAAGATACAAGTCGGCGACAAGATGGCTGGACGTCATGGTAACAA GGGTATCGTCTCCAAGATCGTACGTCGTGAAGATATGCCTTACCTGCCAGACGGTACGCCAGTAGACATCTGTCTTAACC CGCTAGGTGTGCCTTCACGTATGAACCTAGGACAGATCTTTGAGGCTGTTCTAGCATGGGCTGGGCGAAAGCTCGGAGTC AAGTTTGCGACCCCTATTTTCGATGGAGCCACGCTTGATGACCTCAATGCATGGACGGACAAAGCTGGTCTACCACGAGG TGGTCAGATGAAACTCTATGATGGCGGTACAGGCGAGCCCTTTGATCAGGAGGCGACCGTAGGTGTCACCTACTTCCTCA AGCTCGGTCACATGGTCGACGACAAGATGCATGCTCGCTCTATCGGTCCGTACTCACTGATCACACAGCAACCTCTCGGT GGTAAGTCCAACTTCGGAGGTCAGCGCTTCGGAGAGATGGAGGTGTGGGCACTTGAGGCCTTCGGTGCGGCACATGTCCT CCAGGAGATCCTCACCATCAAGAGTGATGACGTCGTAGGTCGCTCTAAGGCTTACGAGGCGATCGTACGTGGCGACAACA TGCCCACGCCAGGTCTCCCCGAGTCTCTCAACGTGCTACTCAATGAGCTCAAGGGTCTAGCCCTCAGCGTACATATTGAG TAA Protein sequence : MASKPTNTRKSFASIAHPMEYPDFLEVQLKSFQDFFQLNTPAESRKKEGLFKVFSENFPIEDTRNNFKLLFEDYFVDPPK YSIEECLRRGLTYSVPLRAKLKLTCEDPEHEDFESTVQDVFLGSIPYMTPAGTFVINGAERVVVSQLHRSPGVFFGSSLH NNGTRLYSARIIPFKGSWIEFATDTNNELYAYIDRKKKLPITTLLRAIGYETDKDILDLFGIAEEIPVTLESLQANYGRQ LAASVILKYYDEESEEETGETETFARYNTLVEQNAILDEDNAQVILENGIETILLRRDLATSDQESTDQEVMDYSIIFNT LKRDSANSEQAAYNFIYNLLRNSTPPDDQSAKEIFNNIFFSEKRYDLGDVGRYKINSKLGLDIDPDVKILTAEDIVAIIR HLIKLVNGKAPVDDIDHLSNRRVRTVGEQLYNQFSIGLSRMARTVKERMNVRDSEVFTPVDLVNSKTIASVVNSFFGTNA LSQFMDQQNPLSEITHKRRLSALGPGGLTRDRAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLCVYAKINELGFITTP YRNVKDGTVDFEDSKLAYFTAEEEEDKTVAQGNAPLDDDGHFIRSRVKARYGADFPVVEPEEVDLMDVSPTQIASIAASL IPFLEHDDANRALMGSNMMRQAVPLLTPEAPIVGTGIERRLVSDSRTQIEAAGDGVVVYVDATKIVVDYDRTEEEELVSF EPSEVTYSLPKYRKTNQSTTIDLSPICRKGDRVVKGQILSEGFSTQDGELALGRNILAAYMPWKGYNYEDAIVLNERVVS EDLFTSIHVDEYSLDVRETKRGMEEFTADIPNVSEEATKDLDANGIVRVGARIVPGDILVGKITPKGESDPTPEEKLLLA IFGDKAGDVKDASLKASPSLKGVVIDTKLYSRANRKGGISATRKITQRYEEELSKLQAALKEELVSKLQIILKKHKTTAT DFVDYIGVVKVKAGTRISKSLLLELDYNDLRMSDWTNDEHTNELVKQTIANYIKKDKITIAEVNRRKLDETLGDELPSGI IQTAKILIAKKRKIQVGDKMAGRHGNKGIVSKIVRREDMPYLPDGTPVDICLNPLGVPSRMNLGQIFEAVLAWAGRKLGV KFATPIFDGATLDDLNAWTDKAGLPRGGQMKLYDGGTGEPFDQEATVGVTYFLKLGHMVDDKMHARSIGPYSLITQQPLG GKSNFGGQRFGEMEVWALEAFGAAHVLQEILTIKSDDVVGRSKAYEAIVRGDNMPTPGLPESLNVLLNELKGLALSVHIE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 45 |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Poras_0738 | YP_004441853.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 48 |
| Poras_0738 | YP_004441853.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 47 |
| Poras_0738 | YP_004441853.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 45 |
| Poras_0738 | YP_004441853.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 45 |
| Poras_0738 | YP_004441853.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 45 |
| Poras_0738 | YP_004441853.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 45 |
| Poras_0738 | YP_004441853.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 45 |
| Poras_0738 | YP_004441853.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 45 |
| Poras_0738 | YP_004441853.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 45 |
| Poras_0738 | YP_004441853.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 44 |
| Poras_0738 | YP_004441853.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 44 |
| Poras_0738 | YP_004441853.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 44 |
| Poras_0738 | YP_004441853.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 44 |
| Poras_0738 | YP_004441853.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 44 |
| Poras_0738 | YP_004441853.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 44 |
| Poras_0738 | YP_004441853.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 44 |
| Poras_0738 | YP_004441853.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 43 |
