Gene Information

Name : AGROH133_10026 (AGROH133_10026)
Accession : YP_004443146.1
Strain :
Genome accession: NC_015508
Putative virulence/resistance : Virulence
Product : type I secretion system ATPase
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG2274
EC number : -
Position : 342305 - 344509 bp
Length : 2205 bp
Strand : -
Note : ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain

DNA sequence :
ATGAAACAGAATACAGCCATGCAGGGTACTGTCGATTTTAGTAACGACCGAAAAGCTGACGACACAGATACTTCCGAAAT
TAAAAATGATAGTGGTCTTATTGCGTTGTGCGCAATCGCCTCACATTACCGCATAGCCGCAGACCCCAAGAGGCTCACAC
ATGAACTCGCCGTTCCCGGCAGGTCACATTCCCGGGATATTTTGAGAGCGGCGAAAAATATCGGCCTGAAGGCGAGGCTG
ATACAGGCGAAATCGGAAAAGCGCATTGTTTCGTTGCCGGTTCCGGCGATCCTGTGCTTTGTCGATGGCAGCTATGGCTT
GTATCTTGGACCTGCAAGCAACGGCATGCACAACATCGCCGATCCCGAAAGTCTGGCGGTTCGCCAGATGGATATCGCAA
CATTGCTGGAGGCGGGCAACGGTTCTTTCATTCTGGTGCAACGGCGGTTTGCGGGGCCAGGCGTTTCCAAAGGCACCTTC
GGTTTCCGATGGTTTCTTCCATCCCTGTTTCGGTATCGCAAAGCATTCGGCCACGTCCTGGTCGCCTCGCTTTTCGTACA
GATTTTCGCACTCGTAACGCCGTTGTTTTTTCAGGTCGTGGTGGACAAGGTCCTCGCCCACAGAAGTTATTCGACCCTCA
TCGTTCTGGTTATCGGTCTCGTCGCTCTCGGCCTATTTGACGTTATCCTGCAATATCTCAGAACCTATGCGCTGTCCCAC
ACCACTAATCGCATAGATGTCGAGCTTGGCCAGAGGCTGTTTCGTCATATGATGAAATTGCCCCTGAGTTATTTCGAAAC
GCGGGCTGCGGGCCAAACCGTTGCGCGTATTCGGGAGCTAGAGACCATCCGGGATTTTTTGACGGGGCAGGGACTTTTCT
CGGGTCTAGATCTGCTCTTCACGGGTGTCTTCATATTTGTTCTGTTTTGTTATTCGACGACCTTGGCATGGATCGTGGTT
GCCTCGATACCGTTTTACATAGGGGTTGGCGTTCTGATCCGGCCATTTCTTAAAGAACGCATCGATGAGAAGTTTGACCG
GGGCGCCTATAGCCAGCAATTGCTGGTGGAAACCGTCGTCGGCATCCAGACGCTGAAGGCGTCGGCGGTTGAGCCGGTTG
TTTCCGCGCAATGGGAAGAAAGGCTGGCGGCATATGTGCGTTCTTCCTTCGGCGCGACAATGCTTGCTTCCAAGGGTCAA
AACGCTATTCAATATATCAACAGGGTCACAAGTGCGGCTTTGCTGCTGTTTGGGGCGCAATCCGTTATCAATGGCGAATT
GAGTGTCGGAGCGCTAGTTGCGTTTAATATGATTGCCAGCCAGGTGTCACAGCCCATCCTGCGCCTCTCGCAATTATGGC
AGGATTTTCAGCAGGTACAGATATCGGTTTCGAGGCTTGCGGATATTTTAAACGCCCCCGTGGAACCGAGACCCAAAAAC
CCTATCAACCTGCCGCCGCCTCGGGGCGCATTGGAGTTCAGACGGGTCAATTTCCGCTATCGGTCAGATACGCCGAACGT
CTTGAATGATATCAATGTCTCCATCCGGCCGGGTGAAGTCGTGGGAATCGTCGGGGCCTCCGGTTCAGGAAAATCCACCC
TCACAAAGCTTATTCAGCGTTTCTATGTGCCTGACAGCGGTCAGGTATTTCTGGACGGGCAGGATATCTCTCAAAGCGAC
CCCGCCTGGCTGAGAAGTCATATTGGTGTGGTGTTACAGGAGAACATGCTGTTCAACCGCACCGTGCATGACAATATAGC
TTTCAGTAACCCGGCAATGTCCCGCGACACCGTAATCCGAATGGCGCGAATGTCCGGTGCGGACGAGTTTATTACGAAGC
TGTCTCGTGGCTACGATACGATGATCGAAGAACGTGGTGCAAATCTCTCGGGCGGTCAGCGGCAAAGGATAGCTCTGGCT
CGTGCTCTGGCAATCAATCCGCCTTTACTTATTCTGGATGAGGCGACGAGCGCATTGGACTATGAAAGCGAGCGGATTAT
TCTCCAGAACATGCGTGATATCGTTCGCGGACGAACAGTCATTATCATCGCTCACAGACTGGCGACTGTTCGCTACTGCA
ATCGCATCATAGGCATGAAAGACGGCGCCATCACCGAGCATGGGACACACGAGGAGCTGCTCGCTCGACCCGATGGGACC
TATGCGCACCTCTGGAACCTTCAAAGTGGAAGTGTTTTCGCGTGA

Protein sequence :
MKQNTAMQGTVDFSNDRKADDTDTSEIKNDSGLIALCAIASHYRIAADPKRLTHELAVPGRSHSRDILRAAKNIGLKARL
IQAKSEKRIVSLPVPAILCFVDGSYGLYLGPASNGMHNIADPESLAVRQMDIATLLEAGNGSFILVQRRFAGPGVSKGTF
GFRWFLPSLFRYRKAFGHVLVASLFVQIFALVTPLFFQVVVDKVLAHRSYSTLIVLVIGLVALGLFDVILQYLRTYALSH
TTNRIDVELGQRLFRHMMKLPLSYFETRAAGQTVARIRELETIRDFLTGQGLFSGLDLLFTGVFIFVLFCYSTTLAWIVV
ASIPFYIGVGVLIRPFLKERIDEKFDRGAYSQQLLVETVVGIQTLKASAVEPVVSAQWEERLAAYVRSSFGATMLASKGQ
NAIQYINRVTSAALLLFGAQSVINGELSVGALVAFNMIASQVSQPILRLSQLWQDFQQVQISVSRLADILNAPVEPRPKN
PINLPPPRGALEFRRVNFRYRSDTPNVLNDINVSIRPGEVVGIVGASGSGKSTLTKLIQRFYVPDSGQVFLDGQDISQSD
PAWLRSHIGVVLQENMLFNRTVHDNIAFSNPAMSRDTVIRMARMSGADEFITKLSRGYDTMIEERGANLSGGQRQRIALA
RALAINPPLLILDEATSALDYESERIILQNMRDIVRGRTVIIIAHRLATVRYCNRIIGMKDGAITEHGTHEELLARPDGT
YAHLWNLQSGSVFA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hlyB NP_755448.1 hemolysin B Virulence PAI I CFT073 Protein 2e-152 49
hlyB CAD33760.1 hemolysin B Virulence PAI I 536 Protein 2e-152 49
hlyB CAD42038.1 HlyB protein Virulence PAI II 536 Protein 2e-152 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
AGROH133_10026 YP_004443146.1 type I secretion system ATPase VFG0841 Protein 6e-143 50
AGROH133_10026 YP_004443146.1 type I secretion system ATPase VFG1557 Protein 1e-152 49
AGROH133_10026 YP_004443146.1 type I secretion system ATPase VFG1501 Protein 1e-152 49
AGROH133_10026 YP_004443146.1 type I secretion system ATPase VFG0907 Protein 1e-152 49
AGROH133_10026 YP_004443146.1 type I secretion system ATPase VFG1269 Protein 2e-132 47