Gene Information

Name : Halhy_4574 (Halhy_4574)
Accession : YP_004449286.1
Strain : Haliscomenobacter hydrossis DSM 1100
Genome accession: NC_015510
Putative virulence/resistance : Unknown
Product : DNA-directed RNA polymerase subunit beta
Function : -
COG functional category : K : Transcription
COG ID : COG0085
EC number : -
Position : 5780320 - 5784141 bp
Length : 3822 bp
Strand : +
Note : COGs: COG0085 DNA-directed RNA polymerase beta subunit/140 kD subunit; HAMAP: DNA-directed RNA polymerase subunit beta; InterProIPR007644:IPR007642:IPR007645:IPR019462:IPR 007120:IPR007641:IPR010243; KEGG: cpi:Cpin_1710 DNA-directed RNA polymerase, beta s

DNA sequence : 
ATGACATTCAATGGTAAGGCACAATCAGCTGAGGCGAAGCGTATCACCTTCAGCAAAACTAAATTTCCAACTCCATACCC
TGATTTCCTTGAAATTCAGCTAAAGTCATTTCAGGAGTTTTTCCAACTGGAAACGACGCCCGAAAATCGTATGAACGAGG
GACTTTACAAGGTTTTTCAAGAAAATTTTCCAATTACTGATGCGAGAAACATTTTCGTACTCGAGTTCCTGGATTACTTT
ATTGACCCCCCCCGTTACAGCATAGAGGAGTGTATGCAACGTGGATTGACCTATAGCGTTCCGCTTAAGGCCAAGTTGCG
TCTGTCCTGTAACGACGAGGAACACGTCGACTTCCAGACCATCGTCCAAGACGTTTTTCTGGGGAACATCCCGTACATGA
CCCCCAAGGGTACCTTTATGATCAATGGTGCTGAGCGCGTGATTGTATCACAGCTTCACCGTTCACCAGGGGTGTTTTTT
GGTCAAAGTGTACACCCCAACGGTACCAAAATTTATTCTGCCAGGGTTATCCCGTTCAAAGGGGCCTGGATGGAATTTGC
TACCGACATCAACACCGTGATGTACGCGTACATCGACCGGAAGAAAAAATTTCCGGTAACTACCCTTCTACGCGCCATAG
GTTACGATACGGACAAAGCGATCCTGGATATCTTTGACCTGGCCGACGAAGTAACGACTACCCGTGAAGCACTCGAAAAG
AGTATTGGCCGCAAACTCGCCGCTCGCGTATTGCGCAGCTGGACCGAAGACTTTGTGGACGAAGACACGGGAGAGGTGGT
AACCATCGAACGGAATGAAATCATTCTGGAACGGGACACCGTTTTGGATGAAGACAATATTGAAGCAATCCTGGAAGCCT
CGGTAGCAACCATCATCCTTCAGAAGGAAGACATCGAGCAGGATTACTCCATTATATACAATACCCTGCAAAAAGACCCA
ACCAGTTCTGAACTGGAAGCGGTACAGTACATCTATCGCCAATTGCGCGGTACCGATCCGCCCGATGAAGAAACGGCGCG
TGGCATCATCGAGAAATTGTTCTTCTCCGATAAACGCTACAACCTGGGTGAGGTAGGCCGCTACAAGATCAACAAAAAGC
TGCAACTGGACATCTCTGAGGAAACCCTGGTGTTGACCAAAGAAGACATCATTTCCATCGTGCGCTTCCTGGTGACCTTG
ATGAACCAAATGGCGGAAATCGACGACATTGACCACCTTGAAAACCGCCGCGTACGTACCGTAGGTGAGCAGCTTTATGC
CCAATTTGGTGTAGGTCTGGCTCGTATGGCCCGTACCATCCGCGAACGGATGAACGTGCGCGATAATGAGGTGTTCACGC
CCGTTGACTTGATCAACGCCCGTACCTTGTCTTCGGTGATCAACTCCTTCTTTGGAACCAGCCAATTGTCGCAGTTCCTG
GATCAAACCAACCCCTTGTCAGAAATCACGCACAAGCGACGTATTTCAGCACTGGGACCAGGTGGTCTGTCCCGCGAACG
CGCCGGTTTTGAGGTTCGTGACGTACACTACTCCCACTACGGACGTTTGTGTACCATCGAAACCCCCGAAGGACCAAACA
TCGGTTTGATCTCGACCTTGTGTGTACACGCCAAGATCAATAAGATGGGCTTCCTGGAAACACCATACCGCAAAGTAATC
GAAGGTCTGGTGGAAAAAGATGGACAACCCTTGTACTTGTCTGCCGAAGGGGAAGACAAAATGCGGATTGCCCAAGCCAA
CGCCTTATTGGAATATGACGGTAGCTTCGTGCAAGACCGGGTCAAGTGCCGCGAACACGGTGATTTCCCGGTATTGACAC
CCGAAGAAATCGACTACATGGACGTAGCACCCAACCAGATTGTAGGGGTGTCCGCTTCCATGATTCCGTTCCTTGAAAAC
GACGACGCCAACCGCGCCTTGATGGGTTCGAACATGCAACGTCAGGCCGTGCCCCTGATCCGCCCTCACTCTCCGATAGT
CGGTACCGGTTTGGAAGGTAAAGTTGCCCGCGACTCCCGCATGCTCATCAACGCAGAAGGTGAAGGGGTAATTGAATACG
TGGATGCAACCGAAATCCACGTGCGTTACGACCGCACCGGGGAAGAGCAGTTGATTTCTTTCGAGGACAACCTGAAAAAA
TACAACCTCATCAAGTTTACCCGTACCAACCAGGGTACTTGTATCAACCTGCGCCCCATTGTGCGCAAGGGAGATCGGGT
AGAAAAAGGCCAAATCCTTTGCGATGGTTACGCCACCGAAAGAGGAGAATTGGCACTTGGCCAAAACATGAAGGTTGCCT
TCATGCCTTGGAAAGGGTACAACTTTGAGGACGCCATCGTAATTTCCGAGCGCGTGGTGCGGGAAGATATTTTTACTTCC
GTACACATCGAGCACTTTGAAATCGACGTACGTGATACCAAGTTGGGCGAGGAAGAACTCACCAACGATATTCCAAACGT
GAGCGAAGAAGCCACCAAAGACCTGGACGAAAACGGAATCATCCGCATCGGTGCCTGGGTTAAAGAAGGCGATATCCTCA
TCGGAAAGATTACCCCAAAAGGCGAATCCGATCCCACCCCCGAAGAAAAACTCTTGAGAGCGATCTTTGGTGACAAGGCC
GGCGACGTGAAGGACGCTTCTTTGAAAGCGCCCCCCTCCACTACGGGTGTAATCATCGACAAGCAACTTTTCGCCCGTGC
GAAAAAAGATAAAGTACAGAAAGGCCAGGAGAAAGACGTATTGTCTAAACTGGATGACCAACACAAAGTGGCTACCAACG
AATTGCTGACGATTCTGGTAGACAAATTGATGATCCTCCTCAAAGACAAAACTTCGCAAGGCATCCGTACCATCTACGGT
GACAATTTGTTGGCCAAAGGGGTTAAGTTTACCCAGGACACCTTGCGTGAACTGGACTATACTTCAGTGGATTATACCAA
CTGGACCGACGAGGCTAAAATCAATGAATTGGTTGCCCGTTTGTTGCACAACTACAGCATCAAACACAACGAAGAAGTTG
GACGCTACAAGCGCGAAAAATTCAACGTGAGCATTGGGGACGAACTCCCTGCGGGTGTACTCAAACTGGCGAAGGTGTAC
ATGGCCAAAAAGCGCAAGCTGAAAGTGGGGGACAAACTCGCTGGCCGTCACGGTAACAAAGGTATCGTATCCCGGATAGT
ACGCGCTGAAGACATGCCCTTCCTCGAAGATGGCACTCCGGTCGACATCGTGTTGAACCCACTGGGGGTTCCTTCACGGA
TGAACCTGGGGCAGATCTTCGAAACGGTATTGGGCTGGGCTGGTGAAAAACTGGGCGTTAAGTTCGCTACTCCAATCTTC
GACGGGGCTACCCGCGATGAAATTGAAGAGTGGATCCAAAAAACGAGCTTGCCAAGTTTGGGTCAAACCTTCCTATCTGA
CGGTGAAACGGGCGACCGTTTCCACCAGCAAGCTACAGTTGGGGTGATCTACATGCTTAAACTCAGCCACATGGTTGACG
ATAAGATGCACGCACGCTCCATCGGCCCATACTCGCTCATTACCCAGCAACCATTGGGTGGTAAAGCACAGTTTGGTGGC
CAGCGTTTTGGGGAAATGGAAGTTTGGGCACTCGAAGCATTTGGTGCGGCCAACATTCTCCAGGAATTGCTTACCATCAA
GTCAGATGATATCAATGGTCGTGCCAAAGCGTACGAGGCCATCGTTAAAGGAGACAATCTTCCAGAACCAAACATTCCGG
AATCCTTCAACGTACTTGTACACGAATTGCGCGGTCTGGCGCTCGATGTGAAATTTGAATAA

Protein sequence : 
MTFNGKAQSAEAKRITFSKTKFPTPYPDFLEIQLKSFQEFFQLETTPENRMNEGLYKVFQENFPITDARNIFVLEFLDYF
IDPPRYSIEECMQRGLTYSVPLKAKLRLSCNDEEHVDFQTIVQDVFLGNIPYMTPKGTFMINGAERVIVSQLHRSPGVFF
GQSVHPNGTKIYSARVIPFKGAWMEFATDINTVMYAYIDRKKKFPVTTLLRAIGYDTDKAILDIFDLADEVTTTREALEK
SIGRKLAARVLRSWTEDFVDEDTGEVVTIERNEIILERDTVLDEDNIEAILEASVATIILQKEDIEQDYSIIYNTLQKDP
TSSELEAVQYIYRQLRGTDPPDEETARGIIEKLFFSDKRYNLGEVGRYKINKKLQLDISEETLVLTKEDIISIVRFLVTL
MNQMAEIDDIDHLENRRVRTVGEQLYAQFGVGLARMARTIRERMNVRDNEVFTPVDLINARTLSSVINSFFGTSQLSQFL
DQTNPLSEITHKRRISALGPGGLSRERAGFEVRDVHYSHYGRLCTIETPEGPNIGLISTLCVHAKINKMGFLETPYRKVI
EGLVEKDGQPLYLSAEGEDKMRIAQANALLEYDGSFVQDRVKCREHGDFPVLTPEEIDYMDVAPNQIVGVSASMIPFLEN
DDANRALMGSNMQRQAVPLIRPHSPIVGTGLEGKVARDSRMLINAEGEGVIEYVDATEIHVRYDRTGEEQLISFEDNLKK
YNLIKFTRTNQGTCINLRPIVRKGDRVEKGQILCDGYATERGELALGQNMKVAFMPWKGYNFEDAIVISERVVREDIFTS
VHIEHFEIDVRDTKLGEEELTNDIPNVSEEATKDLDENGIIRIGAWVKEGDILIGKITPKGESDPTPEEKLLRAIFGDKA
GDVKDASLKAPPSTTGVIIDKQLFARAKKDKVQKGQEKDVLSKLDDQHKVATNELLTILVDKLMILLKDKTSQGIRTIYG
DNLLAKGVKFTQDTLRELDYTSVDYTNWTDEAKINELVARLLHNYSIKHNEEVGRYKREKFNVSIGDELPAGVLKLAKVY
MAKKRKLKVGDKLAGRHGNKGIVSRIVRAEDMPFLEDGTPVDIVLNPLGVPSRMNLGQIFETVLGWAGEKLGVKFATPIF
DGATRDEIEEWIQKTSLPSLGQTFLSDGETGDRFHQQATVGVIYMLKLSHMVDDKMHARSIGPYSLITQQPLGGKAQFGG
QRFGEMEVWALEAFGAANILQELLTIKSDDINGRAKAYEAIVKGDNLPEPNIPESFNVLVHELRGLALDVKFE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00346 YP_008207811.1 DNA-directed RNA polymerase, beta subunit/140 kD subunit Not tested AbaR25 Protein 0.0 46
BJAB0868_00350 YP_008211676.1 DNA-directed RNA polymerase, beta subunit/140 kD subunit Not tested AbaR26 Protein 0.0 46

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Halhy_4574 YP_004449286.1 DNA-directed RNA polymerase subunit beta NC_009085.4918494.p0 Protein 0.0 46
Halhy_4574 YP_004449286.1 DNA-directed RNA polymerase subunit beta NC_010611.6233925.p0 Protein 0.0 46
Halhy_4574 YP_004449286.1 DNA-directed RNA polymerase subunit beta NC_011595.7060572.p0 Protein 0.0 46
Halhy_4574 YP_004449286.1 DNA-directed RNA polymerase subunit beta NC_010400.5987325.p0 Protein 0.0 46
Halhy_4574 YP_004449286.1 DNA-directed RNA polymerase subunit beta NC_010410.6003841.p0 Protein 0.0 46
Halhy_4574 YP_004449286.1 DNA-directed RNA polymerase subunit beta NC_011586.7046027.p0 Protein 0.0 46
Halhy_4574 YP_004449286.1 DNA-directed RNA polymerase subunit beta NC_002695.1.914942.p Protein 0.0 46
Halhy_4574 YP_004449286.1 DNA-directed RNA polymerase subunit beta CP001918.1.gene250.p Protein 0.0 46
Halhy_4574 YP_004449286.1 DNA-directed RNA polymerase subunit beta CP001138.1.gene4362. Protein 0.0 46
Halhy_4574 YP_004449286.1 DNA-directed RNA polymerase subunit beta CP000034.1.gene3741. Protein 0.0 46
Halhy_4574 YP_004449286.1 DNA-directed RNA polymerase subunit beta CP000647.1.gene4402. Protein 0.0 46
Halhy_4574 YP_004449286.1 DNA-directed RNA polymerase subunit beta NC_008702.1.4609796. Protein 0.0 46
Halhy_4574 YP_004449286.1 DNA-directed RNA polymerase subunit beta CP002695.1.gene18.p0 Protein 0.0 46
Halhy_4574 YP_004449286.1 DNA-directed RNA polymerase subunit beta CP004022.1.gene2794. Protein 0.0 45
Halhy_4574 YP_004449286.1 DNA-directed RNA polymerase subunit beta NC_002516.2.881699.p Protein 0.0 44
Halhy_4574 YP_004449286.1 DNA-directed RNA polymerase subunit beta CP000675.2.gene392.p Protein 0.0 44
Halhy_4574 YP_004449286.1 DNA-directed RNA polymerase subunit beta NC_009641.5330265.p0 Protein 6e-177 44
Halhy_4574 YP_004449286.1 DNA-directed RNA polymerase subunit beta NC_009487.5169226.p0 Protein 9e-176 44
Halhy_4574 YP_004449286.1 DNA-directed RNA polymerase subunit beta NC_010079.5776819.p0 Protein 6e-177 44
Halhy_4574 YP_004449286.1 DNA-directed RNA polymerase subunit beta NC_002951.3236234.p0 Protein 1e-176 44
Halhy_4574 YP_004449286.1 DNA-directed RNA polymerase subunit beta NC_007622.3792928.p0 Protein 6e-177 44
Halhy_4574 YP_004449286.1 DNA-directed RNA polymerase subunit beta NC_002745.1123305.p0 Protein 6e-177 44
Halhy_4574 YP_004449286.1 DNA-directed RNA polymerase subunit beta NC_007795.3920377.p0 Protein 6e-177 44
Halhy_4574 YP_004449286.1 DNA-directed RNA polymerase subunit beta NC_009632.5315067.p0 Protein 6e-177 44
Halhy_4574 YP_004449286.1 DNA-directed RNA polymerase subunit beta NC_009782.5559150.p0 Protein 6e-177 44
Halhy_4574 YP_004449286.1 DNA-directed RNA polymerase subunit beta NC_002758.1120515.p0 Protein 6e-176 44
Halhy_4574 YP_004449286.1 DNA-directed RNA polymerase subunit beta NC_002953.2862188.p0 Protein 6e-177 44
Halhy_4574 YP_004449286.1 DNA-directed RNA polymerase subunit beta NC_002952.2860169.p0 Protein 8e-177 44
Halhy_4574 YP_004449286.1 DNA-directed RNA polymerase subunit beta NC_007793.3914836.p0 Protein 6e-177 44
Halhy_4574 YP_004449286.1 DNA-directed RNA polymerase subunit beta NC_003923.1002608.p0 Protein 6e-177 44
Halhy_4574 YP_004449286.1 DNA-directed RNA polymerase subunit beta NC_013450.8613267.p0 Protein 5e-177 44
Halhy_4574 YP_004449286.1 DNA-directed RNA polymerase subunit beta NC_011035.1.6448762. Protein 0.0 43