Gene Information

Name : Psefu_2164 (Psefu_2164)
Accession : YP_004474228.1
Strain : Pseudomonas fulva 12-X
Genome accession: NC_015556
Putative virulence/resistance : Virulence
Product : ECF subfamily RNA polymerase sigma-24 subunit
Function : -
COG functional category : K : Transcription
COG ID : COG1595
EC number : -
Position : 2303009 - 2303524 bp
Length : 516 bp
Strand : +
Note : KEGG: ppg:PputGB1_3282 ECF subfamily RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2

DNA sequence : 
ATGTCCAGACCGGACACGGAAGTCGCTCACCATGATCATCTGCACGCCCTGTATCGTGACCACAGCAGTTGGCTACGTGG
CTGGTTACGCAAGCGCCTAAGCAATTCGGCGGACGCCGCCGACCTTGCCCAGGATACGTTTATCCGGGTTCTGGTTGCGC
GTACTGCCAGCTCTCTGCAGCAACCACGGCACTACCTGACAACCATCGCTCGTGGTCTGGTCATAGACCTCTATCGTCGG
CGCAGCGTGGAGCAAGCCTACCTCGATGTATTGATGTCCAGGCCAGAGGTGCAGGCGCCGTCTGCAGAAACCCGCGCAAT
GATTCTGGAAAGTCTTCTGGCCATCGATCGCATGCTCGATGGCCTAGGCCAGCGCACCCGGCAAATTTTCCTTGCTGTGC
AGTTGGATGGGCTGACTTACGAAAAAGCTGCTGAGCGTTTTGACGTGTCGGTCACCACAGTACGCAAGCACCTGGCTAAA
GGCCTGATGCATTGCCTGTTGATGGACGAAGAATGA

Protein sequence : 
MSRPDTEVAHHDHLHALYRDHSSWLRGWLRKRLSNSADAADLAQDTFIRVLVARTASSLQQPRHYLTTIARGLVIDLYRR
RSVEQAYLDVLMSRPEVQAPSAETRAMILESLLAIDRMLDGLGQRTRQIFLAVQLDGLTYEKAAERFDVSVTTVRKHLAK
GLMHCLLMDEE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL08458.1 FecI Virulence SRL Protein 1e-36 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Psefu_2164 YP_004474228.1 ECF subfamily RNA polymerase sigma-24 subunit VFG1049 Protein 6e-37 49