Gene Information

Name : Psefu_2836 (Psefu_2836)
Accession : YP_004474894.1
Strain : Pseudomonas fulva 12-X
Genome accession: NC_015556
Putative virulence/resistance : Virulence
Product : ECF subfamily RNA polymerase sigma-24 subunit
Function : -
COG functional category : K : Transcription
COG ID : COG1595
EC number : -
Position : 3055809 - 3056348 bp
Length : 540 bp
Strand : -
Note : KEGG: psa:PST_4176 ECF subfamily RNA polymerase sigma-70 factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2

DNA sequence : 
GTGCGTTATCCCCGCACGGTGATGGTGTGCTCGATGTCGTTCGCTTCCCCCCAACAGTCCTTGCAGCAGCTGTATCTCGA
GCACAGCGGCTGGCTGAACGGCTGGCTGCGCAAACGCATGGGCTGTGCGGAGAACGCCGCGGATCTGGCTCAGGACACCT
TCGTGCGCCTGCTCGCCAAGCACCGTGAAGTGCCCTCGCTGCGTGAGCCGCGGGCTTATCTCTCGACCATCGCCCATTCG
CTGCTGGTCAACCACTGGCGTCGCCAGGCGATCGAACGCGCCTACCTCGAAGCCCTGGCCCTGCAGCCGGAGCCGCAGGC
ACCGTCGCCGGAAACCACCGAACTGATCATCGAAACCCTGTTGGCCATCGATGCCATGTTGCTGCGCCTGCCTGCCAAGG
TGCGCGAGGCGTTCCTGCTTTCCCAGCTCGACGGTCTGACCTACGCAGCCATCGCCACGCGGCTGCAGGTGTCCGAGCGC
ATGGTCAAGAAGTACATGGCCCAGGCCATGCTGCAGTGCCTGCTGTTAGCCGAGGGTTGA

Protein sequence : 
MRYPRTVMVCSMSFASPQQSLQQLYLEHSGWLNGWLRKRMGCAENAADLAQDTFVRLLAKHREVPSLREPRAYLSTIAHS
LLVNHWRRQAIERAYLEALALQPEPQAPSPETTELIIETLLAIDAMLLRLPAKVREAFLLSQLDGLTYAAIATRLQVSER
MVKKYMAQAMLQCLLLAEG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL08458.1 FecI Virulence SRL Protein 1e-31 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Psefu_2836 YP_004474894.1 ECF subfamily RNA polymerase sigma-24 subunit VFG1049 Protein 5e-32 50