Gene Information

Name : Psefu_3168 (Psefu_3168)
Accession : YP_004475225.1
Strain : Pseudomonas fulva 12-X
Genome accession: NC_015556
Putative virulence/resistance : Virulence
Product : ECF subfamily RNA polymerase sigma-24 subunit
Function : -
COG functional category : K : Transcription
COG ID : COG1595
EC number : -
Position : 3394232 - 3394756 bp
Length : 525 bp
Strand : +
Note : KEGG: pfl:PFL_3313 ECF subfamily RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2

DNA sequence : 
ATGACCCCTTCGGATACCTCTACCCTGCACCAGCTGTACACCAGCCATCGCAGCTGGCTGCAGCAGTTCCTGCGCCGTCG
CCTGGGTGACAGCGCCGATGCCGCCGATCTGGTGCAGGACACCTTCGTGCGCCTGCTGCTGCGCCCGCGTCGCTTCGACA
GCCACAGTGGCGAGCGCTCGTACCTGGCGACCATCGCTCGCGGACTGAGCATCGATCATTGGCGCCGCAAACAGCTGGAA
CAAGCCTGGTTGAGCGCCCTGGCAAGCCGTCCGGAAGCACTGCAGCCGTCGCCGGAGCAGGCCGCACTGATCATCGAAAC
CCTGCACGAAGTGGACGCCATGTTGCTGCGCCTACCCGCGCGGGTGCGCCAGGCGTTTCTGCTCGCCCAGCTCGACGGCC
TGCCCTATCGCGAGATCGCCACGCAGCTCGGCGTGTCCGAGCGCATGGTCAAGAAATACCTGGCCCAGGCGCTGCTGCAC
TGCGCACTGCTCGAAGCCGAACTCGACGGTCTGCTGGTCGAATGA

Protein sequence : 
MTPSDTSTLHQLYTSHRSWLQQFLRRRLGDSADAADLVQDTFVRLLLRPRRFDSHSGERSYLATIARGLSIDHWRRKQLE
QAWLSALASRPEALQPSPEQAALIIETLHEVDAMLLRLPARVRQAFLLAQLDGLPYREIATQLGVSERMVKKYLAQALLH
CALLEAELDGLLVE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL08458.1 FecI Virulence SRL Protein 2e-25 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Psefu_3168 YP_004475225.1 ECF subfamily RNA polymerase sigma-24 subunit VFG1049 Protein 8e-26 45