Gene Information

Name : Psefu_4393 (Psefu_4393)
Accession : YP_004476439.1
Strain : Pseudomonas fulva 12-X
Genome accession: NC_015556
Putative virulence/resistance : Virulence
Product : ECF subfamily RNA polymerase sigma-24 subunit
Function : -
COG functional category : K : Transcription
COG ID : COG1595
EC number : -
Position : 4795713 - 4796210 bp
Length : 498 bp
Strand : -
Note : KEGG: avn:Avin_44150 FecI-like iron uptake RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2

DNA sequence :
ATGCCATCCGGACTCGCCCTCGATAGGCTGTATATCGAACACCACGGCTGGCTGCAGGGCTGGCTGCAGGCGCGCCTGAA
CAACCGCGCCGATGCTGCCGACCTGGCCCAGGACACCTTCCTGCGTCTGCTGCAGCGCCGCATCGGCGAGCTGGCTGAGC
CGCGCGCCTACCTGCGCACGGTGGCACGCGGGCTGGTCATCGACCTGTGGCGCCGTCGTGATATCGAGCGCGCCTGGCTG
GAAACCATCGCTCAGTTGCCGGAGCACCAGGCCCCCTCTCCGGAAACCGGCCTGCTGATCATCGAGTCGCTGGTCGCCAT
CGACAGTCTGCTGGACGAGCTGCCGGCTGCAGTGCGCGAAGCCTTTCTGCTGGCCCAGTTGGACGGCATGACCTGCCCGG
CAATCGCCCAGCGCCTGGGCGTGTCGCTGTCCACTGTCGAGCGTTACATCGCCAAGGCACTGCGCCATTGCTACCGGCTG
ACGTTCGAGCAGCCATGA

Protein sequence :
MPSGLALDRLYIEHHGWLQGWLQARLNNRADAADLAQDTFLRLLQRRIGELAEPRAYLRTVARGLVIDLWRRRDIERAWL
ETIAQLPEHQAPSPETGLLIIESLVAIDSLLDELPAAVREAFLLAQLDGMTCPAIAQRLGVSLSTVERYIAKALRHCYRL
TFEQP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL08458.1 FecI Virulence SRL Protein 2e-34 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Psefu_4393 YP_004476439.1 ECF subfamily RNA polymerase sigma-24 subunit VFG1049 Protein 8e-35 47