Gene Information

Name : DelCs14_3238 (DelCs14_3238)
Accession : YP_004488594.1
Strain : Delftia sp. Cs1-4
Genome accession: NC_015563
Putative virulence/resistance : Virulence
Product : ECF subfamily RNA polymerase sigma-24 factor
Function : -
COG functional category : K : Transcription
COG ID : COG1595
EC number : -
Position : 3668257 - 3668808 bp
Length : 552 bp
Strand : +
Note : manually curated; TIGRFAM: RNA polymerase sigma-70; KEGG: dac:Daci_3563 ECF subfamily RNA polymerase sigma-24 factor; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2

DNA sequence : 
TTGATAAGCATTCTTATTATCTTTTGCAGCAGCGATTGCCACTGCGCGCCCGCCTCCTCCGCCCCAGCCTTCTCCGTGCA
CAGCCTCTACCAGAACCACCATCCCTGGCTGGAAAGCCTGCTGCGCAAACGCCTGGGCAACCGTGACGATGCCGCCGACC
TGGCCCAGGACACCTTTGTGCGCCTGCTGCGCTCGCCCCTGCCGCAGCAGGACATCCGCGAACCCAGGCGCTACCTGGCC
ACCATCGCCCGGGGCCTGGTCGCCGACCTGTTTCGCCGCCGCACGCTGGAGCAGTCCTATCTGGACTATCTGGCCCAGTT
GCCGCAATCGCTGGCGCCTTCGCCCGAAGAGCAGGCCATCGTCCAGCAGACCCTGCTGGATGTGGACCGCATGCTCCAAG
GCCTTCCGCCCAAGGTTCGCGAAGCCTTCGTGCTGGCCCAGTTCGAGGAACTGAGCTACCCAGAGATCGCCCAGCGCCTG
GGTGTATCGCTGCGCACCGTCAGCAACTACCTGACCCGGGCGATGGAGCATTGCTGCCTGGTCCTGGCATAG

Protein sequence : 
MISILIIFCSSDCHCAPASSAPAFSVHSLYQNHHPWLESLLRKRLGNRDDAADLAQDTFVRLLRSPLPQQDIREPRRYLA
TIARGLVADLFRRRTLEQSYLDYLAQLPQSLAPSPEEQAIVQQTLLDVDRMLQGLPPKVREAFVLAQFEELSYPEIAQRL
GVSLRTVSNYLTRAMEHCCLVLA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL08458.1 FecI Virulence SRL Protein 2e-34 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
DelCs14_3238 YP_004488594.1 ECF subfamily RNA polymerase sigma-24 factor VFG1049 Protein 7e-35 47