Gene Information

Name : DelCs14_3506 (DelCs14_3506)
Accession : YP_004488853.1
Strain : Delftia sp. Cs1-4
Genome accession: NC_015563
Putative virulence/resistance : Virulence
Product : ECF subfamily RNA polymerase sigma-24 factor
Function : -
COG functional category : K : Transcription
COG ID : COG1595
EC number : -
Position : 3973971 - 3974501 bp
Length : 531 bp
Strand : -
Note : KEGG: dac:Daci_3268 ECF subfamily RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2

DNA sequence : 
ATGCCATCCGCCCCAGCCTCCAGCGCCGCCTCCAGCCCCTTGCACCGCGAAATCTCCGCCCTCTATGCCGGCCACCATGG
CTGGCTGCAGGGCTGGCTGCGCCGCCGACTTGGCAATGCCTGCGACGCGGCCGACCTGGCGCAGGACACCTTCATCCGCC
TGCTCACCGCGCCTGCGGGCGACTTGCCCGCCCTGCGCGAGCCGCGGGCCTACCTGGCCACGGTGGCGCGGCGCCTGCTG
ATCAACCACCTGCGCCGCCAGTCGCTGGAACAGGCCTGGCTGCAGGCCCTGGCCGCGCTGCCAGCGCCGCAGGCGCCGTC
GCCCGAGCAGCAATTGCTCATCCTGCAGGCGCTGCAGGAGGTCGATGCCATGCTCGACGGCCTGCCGCCCAAGGTGCGCG
CGGTCTTCATCCTGTCCCAGGTCGAGGGCCTGACCTATGCGGCCATTGCCGAGCAACTGGGCATGGGCCTGCGCTCGGTC
AAGCGCTACATGGCCCAGGCCATGGCCGAGTGCATCCTGCTGTCGGCATGA

Protein sequence : 
MPSAPASSAASSPLHREISALYAGHHGWLQGWLRRRLGNACDAADLAQDTFIRLLTAPAGDLPALREPRAYLATVARRLL
INHLRRQSLEQAWLQALAALPAPQAPSPEQQLLILQALQEVDAMLDGLPPKVRAVFILSQVEGLTYAAIAEQLGMGLRSV
KRYMAQAMAECILLSA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL08458.1 FecI Virulence SRL Protein 7e-27 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
DelCs14_3506 YP_004488853.1 ECF subfamily RNA polymerase sigma-24 factor VFG1049 Protein 3e-27 48