Gene Information

Name : DelCs14_3623 (DelCs14_3623)
Accession : YP_004488970.1
Strain : Delftia sp. Cs1-4
Genome accession: NC_015563
Putative virulence/resistance : Virulence
Product : ECF subfamily RNA polymerase sigma-24 factor
Function : -
COG functional category : K : Transcription
COG ID : COG1595
EC number : -
Position : 4098341 - 4098964 bp
Length : 624 bp
Strand : -
Note : KEGG: axy:AXYL_04750 RNA polymerase sigma-24 subunit; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2

DNA sequence : 
ATGCGTCCTGTCTCGATAGAATGCGTTTCATTCTCAATTCCGCCGCTGCGGCTGCCGCCTTGCCCCGGGCGCAGCGCAGA
AGAAACCGTGTCTTCCACCGAATCCGCGCTGCAGCAACGCATGGCTGCCCTTTATGCCGACCACCATGGCTGGTTGCGCG
GCTGGCTGCGGCGCAGGGTGGGCAATGCGTTTGATGCGGCCGATGTGGCGCATGACACGTTTGTGCGCATCCTGGCGTCG
CGCGATGTGCTGCTGGGCATGGCGGAGCCACGCGCCTACCTGACGACCACGGCCAGGCGGCTGCTGGTGGACCGGGCGCG
GCGCCAGGCCATGGCGCAGGCCTATCTGGATGAGCTGGCGCTGGTGGCGCAAAGCCTGCCCGGCTATCCGGCGCCCGAAG
AAATCCTGATGGCGGTGCAGGCGCTGGAGCAGATTGGCGCTGCGCTGGAGGGGCTGGCCGAGCGCCCGCGCGAGGCGTTT
CTGCGCCACTACCTGGACGAGCAGCCGCAGGCCGAGATTGCACAGGGCCTGGGTGTTTCCACGCGCATGGTGCAGAAGTA
CCTGGTGCAGGCGCTGCTGCACTGCCGCGCCCATTGCCCTGCCGTGGCCGAGCATGTCCGGTAG

Protein sequence : 
MRPVSIECVSFSIPPLRLPPCPGRSAEETVSSTESALQQRMAALYADHHGWLRGWLRRRVGNAFDAADVAHDTFVRILAS
RDVLLGMAEPRAYLTTTARRLLVDRARRQAMAQAYLDELALVAQSLPGYPAPEEILMAVQALEQIGAALEGLAERPREAF
LRHYLDEQPQAEIAQGLGVSTRMVQKYLVQALLHCRAHCPAVAEHVR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL08458.1 FecI Virulence SRL Protein 3e-21 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
DelCs14_3623 YP_004488970.1 ECF subfamily RNA polymerase sigma-24 factor VFG1049 Protein 1e-21 45