|
Name : SerAS12_0981 (SerAS12_0981) Accession : YP_004499441.1 Strain : Serratia sp. AS12 Genome accession: NC_015566 Putative virulence/resistance : Unknown Product : protein-export membrane protein SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 1086171 - 1087985 bp Length : 1815 bp Strand : + Note : KEGG: spe:Spro_1063 preprotein translocase subunit SecD; TIGRFAM: SecD export membrane protein; SecD/SecF/SecDF export membrane protein; PFAM: SecD/SecF/SecDF export membrane protein DNA sequence : ATGCTGATCGTTGTGATCATCGTCGGTCTGCTTTATGCGCTTCCCAACCTCTATGGTGAGGATCCGGCTGTACAAATCAC TGGCGCGCGCGGTGTCGCCGCCAGTGAAACTACGCTGGACCAAGTCCGTACCGTATTAGAAAAAGACAATATCGCGAGCA AGTCGATTGCGCTGGAAAATGGCGCCATCCTGGCTCGCTTTAAAGATCCTGACGTTCAGTTGCGTGCCCGTGAAGCCTTG ATGGCGGAGCTGGGCGACAAGTTCGTCGTCGCGCTGAACCTGGCTCCGGCCACGCCGGCCTGGTTGGCCATGTTGGGCGC CGAACCGATGAAGCTGGGCCTGGACCTGCGTGGTGGCGTGCACTTCCTGATGGAAGTGGACATGGACACCGCGCTGGGCA AGCTGCAGGAACAAACCATGGATACCCTGCGCAGCGAATTGCGTGAAAAGGGCATTCCTTATGCGTCTATCCGCAAGCTG GACAACAACGGCGTGGAAGTTCGCTTCCGTGACGATGCCGCCCGCGATCAGGCCATCAGCTACATAACCCCGCGTCAGCG CGATCTGGTGCTTTCCGCCAATGGCACCAACACCCTGAAGGCCAGCCTGACGGATGCTCGTCTGAGCGAAGCGCGCGAAT ACGCGGTGCAGCAGAACATCACTATCCTGCGTAACCGCGTTAACCAGCTCGGCGTTGCCGAACCGCTGGTGCAGCGCCAG GGCTCTGACCGTATCGTGGTTGAATTGCCGGGTATTCAGGATACCGCACGCGCCAAAGAGATCCTGGGCGCTACCGCTAC GCTGGAATTCCGTCTGGTCAACACCAACGCGGATGCGACAGCTGCGGCCAACGGCCGTGTACCGGGTGATTCCGAGGTGA AAAACACGCGCGAAGGCCAGCCGGTAGTGCTGTATAAGCGTGTGATCCTGACCGGTGACCACATCACCGACTCTACCTCC AGCACCGACGAATACAACCAGCCGCAGGTTAATATCTCGCTCGACAGCGCCGGTGGCACGTCAATGTCCAACTTCACCAA GGACAACATCGGCAAACCGATGGCGACCCTGTTCGTGGAGTATAAGGACAGCGGCAAGAAAGACGCCAACGGCCGTGCGA TTCTGGTGAAGCAGGAAGAAGTGATCAACGTGGCGAACATTCAGTCACGCTTGGGCAACAGCTTCCGTATCACCGGTATC GGCAACCCGAACGAAGCGCGTCAGCTCTCGCTGCTGCTGCGCGCCGGTGCGCTGATTGCCCCTATCCAGATCGTGGAAGA ACGTACTATCGGCCCAACCCTGGGGCAACAGAACATTACCCAAGGTCTGGAAGCCTGTCTGTGGGGCCTGGTGGCTTCTA TCGTGTTCATGGTGGTTTGGTACCGTAAGTTCGGCATGATCGCCACGACGGCGCTGGTGGCCAACCTGGTGCTGATTGTC GGCGTGATGTCCCTGCTGCCGGGGGCGACGCTGACCATGCCGGGCATTGCCGGTATCGTGCTGACGCTGGCGGTGGCGGT CGACGCCAACGTACTGATAAACGAACGTATCAAGGAAGAACTGAAGAATGGACGCTCCATTCAACAGGCGATCCATGAAG GCTATAAAGGCGCGTTCTCCAGTATTGTTGACGCCAACATCACGACCCTGATCACCGCCATCATTCTGTACGCAGTGGGC ACCGGTTCGATCAAGGGCTTTGCGATTACTACCGCAATCGGTGTGGCGACGTCCATGTTCACCGCGATTGTCGGTACCCG TGCCATCGTCAACCTGCTTTACGGCGGCAAACGCATTAACAAGCTGTCTATCTGA Protein sequence : MLIVVIIVGLLYALPNLYGEDPAVQITGARGVAASETTLDQVRTVLEKDNIASKSIALENGAILARFKDPDVQLRAREAL MAELGDKFVVALNLAPATPAWLAMLGAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQTMDTLRSELREKGIPYASIRKL DNNGVEVRFRDDAARDQAISYITPRQRDLVLSANGTNTLKASLTDARLSEAREYAVQQNITILRNRVNQLGVAEPLVQRQ GSDRIVVELPGIQDTARAKEILGATATLEFRLVNTNADATAAANGRVPGDSEVKNTREGQPVVLYKRVILTGDHITDSTS STDEYNQPQVNISLDSAGGTSMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAILVKQEEVINVANIQSRLGNSFRITGI GNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGQQNITQGLEACLWGLVASIVFMVVWYRKFGMIATTALVANLVLIV GVMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELKNGRSIQQAIHEGYKGAFSSIVDANITTLITAIILYAVG TGSIKGFAITTAIGVATSMFTAIVGTRAIVNLLYGGKRINKLSI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 5e-116 | 48 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 2e-115 | 48 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 1e-115 | 48 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 1e-115 | 48 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 1e-115 | 48 |
