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Name : rpoB (PGTDC60_1509) Accession : YP_004510224.1 Strain : Porphyromonas gingivalis TDC60 Genome accession: NC_015571 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : - Position : 1562399 - 1566208 bp Length : 3810 bp Strand : + Note : similar to RefSeq{20100916}, gi|34540221|ref|NP_904700.1| DNA-directed RNA polymerase subunit beta [Porphyromonas gingivalis W83]|, percent identity 99.9 in 1269 aa, BLASTP E(): 0 DNA sequence : ATGACGCCGACTACAAACAACAAAAGAATCAACTTTGCTTCGATAAAAAATCCGCTTTTCTATCCGGACTTTCTCGAAGT TCAACTCAAGTCGTTCCATGACTTCCTTCAGTTAGATACTCCGCCCGAGAGGAGAAAAAAAGAAGGTCTTTATAAAGTTT TTGCGGAAAATTTTCCAATAACTGACACCCGTAACAACTTTGTTCTGGAATTTCTTGACTACTATATCGATCCCCCCAAG TATTCCATTGAGGAATGTCTTAGCAGGGGGCTCACCTATAGCGTCCCTCTGAAAGCTAAGCTAAAACTGTATTGTACGGA TCCTGATCACGAAGATTTTGCGACCGTAATTCAGGACGTTTTTCTTGGCCCCATACCCTATATGACAAGTTCCGGCACAT TTGTTATAAATGGAGCCGAGCGCGTTATTGTTTCCCAATTGCACCGTTCTCCGGGTGTATTCTTTGGGCAAAGTCTTCAT ACTAATGGTACGAAACTATATTCAGCGCGAATCATACCATTCAAAGGCTCATGGATTGAATTTGCTACGGACATTAACAA TGTCATGTATGCATACATCGATAGAAAGAAGAAACTTCCTGTAACAACTCTTCTCCGTGCCATTGGTTTCGAAGCAGACA AAGACATTCTCGACATCTTCAATCTTGCCGAAGAGGTAAAAGTAACGAAGGCCAACCTGAAGAAATGTATAGGGCGCAAA TTAGCAGCTCGCGTCATCAATACGTACATCGATGACCTCAGTGACGAAGACACCGGCGAAGTTGTTTCCATGGAGCGAAT CACTGTCGTGGTGGACAGAGAGGTTGAACTGACAGAAGATAATATCGAGGCAATCCTCAACTCAAATACACAAACAATCC TACTGCACCGAAACGATTCGAATACTTCTGATTATAGTATTATATTCAACACTTTACAGAAGGATCCATGTAACTCGGAA AAAGAGGCTCTGTACTATGTATACAGGCAGCTCCGTAATGCAGAACCTGCAGACGATGCAAGTGCTAGAGAAGTAATAAC GAATCTGTTTTTCTCTGATAAACGATACGACTTGGGCGATGTCGGACGCTATCGTATCAATAAGAAACTCAATTTGAATA TTGATCCTGATATCAAAGTGCTGACCAATGAAGATATTATTGAGATCATCAAGTATCTTATTGAGTTAGTAAATTCCAAG GCATCAGTAGATGATATAGACCACTTGTCGAACCGTCGTGTTCGGACTGTCGGAGAGCAGCTTTACAACCAATTTGGTAT TGGTTTGGCCCGTATGGCCAGGACAGTACGCGATCGAATGAATGTTCGCGATAATGAAGTTTTCACACCTATCGATTTGG TCAATGCTAAGACTATTTCCTCCGTTGTGAATTCTTTCTTTGGCACCAATGCCTTGTCGCAGTTCATGGATCAGACAAAC CCATTGGCTGAAATAACGCATAAGCGACGTCTGTCGGCATTGGGCCCCGGAGGTCTATCGCGCGAACGGGCCGGCTTTGA AGTGCGAGACGTTCACTACACGCACTACGGTCGTCTATGCCCTATTGAAACACCTGAAGGACCTAATATCGGTCTGATCT CCTCCCTCTGCGTATACGCCAAAATCAGTGATTTGGGTTTTATTACAACACCATACCGGGAAGTAAAGAACGGCAAAGTA GATTTCTCCGACAATGGACTGAAATACTACACGGCAGAAGAAGAGGAAGAGAAGACCGTAGCACAAGGAAATGCGCCTCT TGACGAAAATGGTCGATTTGTCAGAGAACGAGTAAAAGCACGTTACGAGTCGGATTTCCCATTGGTTACACCGGATGAGG TCGACCTGATGGACGTTTCGCCTACTCAAATTGCTTCAATCGCAGCAGCTTTAATTCCCTTCTTGGAACACGACGATGCC AACCGTGCGTTGATGGGTTCTAACATGATGCGTCAGGCTGTTCCCCTACTAAGACCTGAATCTCCGATTGTTGGTACTGG TATAGAAGGAAAATTGGTGAAAGATTCTCGCACACAGATTGTGGCAGAGAGGGGCGGAGAGGTCGTTTTTGTCGATGCCT CGTGCATCAAAATTCGTTACGACAGAACAGCTGACGAAGAGTTTGTAAGTTTTGATGATGCAATCGTCACCTACTATCTC CCCAAATATCGCAAAACGAATCAGAGTACAACTATCGACTTGCATCCCATTTGCTCCAAAGGAGATAGGGTGGAGGCCGG TCAAATCCTGACGGAGGGTTATTCTACCCAAGGAGGAGAATTAGCTCTCGGCCGTAATGTTCAAGTAGCATACATGCCCT GGAAAGGATATAACTATGAGGATGCTATCGTTTTGAATGAGCGAATGGTTAGAGAGGACTTCTTCACATCTGTTCACGTG GACGAATATATCCTTGAAGTGAGAGAGACTAAAAGAGGTCTTGAAGAGTTAACTTCGGATATTCCGAATGTCAGTGAAGA CGCTACAAGAGACTTGGACGAAAACGGTATCGTGCGCATCGGGGCACATATCGAACCCGGAGATATCCTTATTGGAAAAA TTACACCTAAAGGGGAGTCAGATCCAACCCCTGAAGAAAAACTGCTACGAGCAATTTTCGGTGATAAAGCCGGTGACGTT AAGGATGCATCATTGAAAGCCACTCCCTCTCTGCGCGGAGTTGTAATTGACACCAAATTGTTTTCTAAGGCGGCAAAGAA AAAGAGTCGGACATCGACCAAAGAAGCTGTAAGCAAACTTGACGAAACATACGCGAAAAGGCAGCAACAACTTCATGAGC GTCTGATCGAAAAGCTAACAGAACTGACCAAAGGCAAAACCTGCTGTGGCGTAAAGGACTACTTGAATGTTGAGTTGATT AAGGCCGGCAGCAAATTCGCCAAAAAAGATCTTGAAGCTCTTGATTTCAATGTGATCCAATTAAGTGATTGGACAAATGA TGCACATACGAACGAGTTGATTAAGGCTGTTGCGGTGAATTATCTGAAGCACTCCAAGGAGATTGAAGCTGAACTACGGC GTCGCAAATTAGATGAGACCATCGGGGACGAACTGCCTGCCGGTATTGTTCAAATGGCCAAAGTCTATATAGCCAAGAAA CGGAAGATCCAAGTTGGCGACAAGATGGCCGGACGTCATGGAAATAAAGGTATTGTGTCCAAAATCGTGCGTCAAGAGGA TATGCCGTTCCTCGCAGACGGTACTCCGGTAGACATATGCCTAAACCCTCTTGGTGTACCCTCCCGTATGAACTTGGGAC AGATATTCGAAGCGGTACTTGCCTGGGCGGGACGCAAGATGAATGTCAAATTTGCTACACCTATCTTCGATGGAGCTTCC CTCAATGATATGAATGAGTGGACAGACAAAGCAGGGCTACCTCGTGATGGAAAGACATATCTATACGATGGTGGTACCGG CGAACGTTTCGACCAACCTGCAACCGTTGGTGTAACTTATTTCTTGAAGCTTGGACACATGGTTGATGACAAGATGCATG CTCGATCCATCGGGCCATATTCACTCATCACCCAGCAACCTCTCGGCGGTAAAGCCCAATTTGGAGGACAACGATTTGGA GAGATGGAGGTTTGGGCTCTTGAAGCATTTGGAGCTTCGCATATCTTGCAAGAAATTCTTACTGTGAAATCTGACGATGT TGTTGGACGTTCAAAGGCATACGAAGCGATAGTCAAAGGAGATCCGATGCCTACACCGGGTATTCCGGAGTCGCTTAACG TGCTATTGCATGAATTGAAAGGCCTTGGTTTAAGTTTTTCTTTGGACTAA Protein sequence : MTPTTNNKRINFASIKNPLFYPDFLEVQLKSFHDFLQLDTPPERRKKEGLYKVFAENFPITDTRNNFVLEFLDYYIDPPK YSIEECLSRGLTYSVPLKAKLKLYCTDPDHEDFATVIQDVFLGPIPYMTSSGTFVINGAERVIVSQLHRSPGVFFGQSLH TNGTKLYSARIIPFKGSWIEFATDINNVMYAYIDRKKKLPVTTLLRAIGFEADKDILDIFNLAEEVKVTKANLKKCIGRK LAARVINTYIDDLSDEDTGEVVSMERITVVVDREVELTEDNIEAILNSNTQTILLHRNDSNTSDYSIIFNTLQKDPCNSE KEALYYVYRQLRNAEPADDASAREVITNLFFSDKRYDLGDVGRYRINKKLNLNIDPDIKVLTNEDIIEIIKYLIELVNSK ASVDDIDHLSNRRVRTVGEQLYNQFGIGLARMARTVRDRMNVRDNEVFTPIDLVNAKTISSVVNSFFGTNALSQFMDQTN PLAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLCVYAKISDLGFITTPYREVKNGKV DFSDNGLKYYTAEEEEEKTVAQGNAPLDENGRFVRERVKARYESDFPLVTPDEVDLMDVSPTQIASIAAALIPFLEHDDA NRALMGSNMMRQAVPLLRPESPIVGTGIEGKLVKDSRTQIVAERGGEVVFVDASCIKIRYDRTADEEFVSFDDAIVTYYL PKYRKTNQSTTIDLHPICSKGDRVEAGQILTEGYSTQGGELALGRNVQVAYMPWKGYNYEDAIVLNERMVREDFFTSVHV DEYILEVRETKRGLEELTSDIPNVSEDATRDLDENGIVRIGAHIEPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDV KDASLKATPSLRGVVIDTKLFSKAAKKKSRTSTKEAVSKLDETYAKRQQQLHERLIEKLTELTKGKTCCGVKDYLNVELI KAGSKFAKKDLEALDFNVIQLSDWTNDAHTNELIKAVAVNYLKHSKEIEAELRRRKLDETIGDELPAGIVQMAKVYIAKK RKIQVGDKMAGRHGNKGIVSKIVRQEDMPFLADGTPVDICLNPLGVPSRMNLGQIFEAVLAWAGRKMNVKFATPIFDGAS LNDMNEWTDKAGLPRDGKTYLYDGGTGERFDQPATVGVTYFLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFG EMEVWALEAFGASHILQEILTVKSDDVVGRSKAYEAIVKGDPMPTPGIPESLNVLLHELKGLGLSFSLD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 44 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | YP_004510224.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 45 |
| rpoB | YP_004510224.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 44 |
| rpoB | YP_004510224.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 44 |
| rpoB | YP_004510224.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 44 |
| rpoB | YP_004510224.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 44 |
| rpoB | YP_004510224.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 44 |
| rpoB | YP_004510224.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 44 |
| rpoB | YP_004510224.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 44 |
| rpoB | YP_004510224.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 44 |
| rpoB | YP_004510224.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 44 |
| rpoB | YP_004510224.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 44 |
| rpoB | YP_004510224.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 44 |
| rpoB | YP_004510224.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 44 |
| rpoB | YP_004510224.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 44 |
| rpoB | YP_004510224.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 44 |
| rpoB | YP_004510224.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 44 |
| rpoB | YP_004510224.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 43 |
