Gene Information

Name : Metme_2730 (Metme_2730)
Accession : YP_004513613.1
Strain : Methylomonas methanica MC09
Genome accession: NC_015572
Putative virulence/resistance : Virulence
Product : ECF subfamily RNA polymerase sigma-24 subunit
Function : -
COG functional category : K : Transcription
COG ID : COG1595
EC number : -
Position : 3018606 - 3019115 bp
Length : 510 bp
Strand : -
Note : KEGG: psa:PST_4176 ECF subfamily RNA polymerase sigma-70 factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2

DNA sequence : 
GTGAGCACAGAACTGACAGACGACAGCGGCCAAGCGTTTACACGGCTTTATCAAGACCATCACTCCTGGCTGCTCATGTG
GCTGGAAAAACGGGTGCAAGACCGTCTGCAGGCGGAAGACCACGCCCATGACACCTTTATGCGGGTTATCGGCTCAAAAG
AAATTCCGAACCTGAATGAACCCCGCGCTTACCTTACCACCATCGCCAAGCGCTTGTTGATCAATCATTGGCGTCGTAAC
ACCATAGAACGGGCTTACCTGGAACGTCTCGCCGTCTATCCTGAAGAAGTTGCCGTTTCGCCCGAGGAAAGCAGTATCAT
TCTCGAAGTCCTGCGGGAAATCGATGAATTACTCAATCAACTGCCTGCAAAAGTCCGCCAAGCATTTTTATTGGCACAAC
TGGATGATCTCACCTATGCCGAAATTGGCCAGAAGCTTGGCGTTAGCGACCGTATGGTCAGAAAATACATGGCGCAAGCC
ATGTTTCAGTGCTTGAGTGCCGGGTTTTAG

Protein sequence : 
MSTELTDDSGQAFTRLYQDHHSWLLMWLEKRVQDRLQAEDHAHDTFMRVIGSKEIPNLNEPRAYLTTIAKRLLINHWRRN
TIERAYLERLAVYPEEVAVSPEESSIILEVLREIDELLNQLPAKVRQAFLLAQLDDLTYAEIGQKLGVSDRMVRKYMAQA
MFQCLSAGF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL08458.1 FecI Virulence SRL Protein 3e-33 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Metme_2730 YP_004513613.1 ECF subfamily RNA polymerase sigma-24 subunit VFG1049 Protein 1e-33 48