|
Name : Metme_3823 (Metme_3823) Accession : YP_004514677.1 Strain : Methylomonas methanica MC09 Genome accession: NC_015572 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : - Position : 4235986 - 4240062 bp Length : 4077 bp Strand : - Note : TIGRFAM: DNA-directed RNA polymerase, beta subunit, bacterial-type; HAMAP: DNA-directed RNA polymerase subunit beta; KEGG: mca:MCA1066 DNA-directed RNA polymerase subunit beta; PFAM: DNA-directed RNA polymerase, subunit 2, domain 6; RNA polymerase Rpb2, d DNA sequence : ATGGCCTATTCTTTTACCGAAAAAAAGCGTATCCGTAATAATTTTGGAAAAGGTTCTGAAGTACTGGAAGTTCCTTATCT TTTAGCAACACAAATTGATTCGTATGCAAGTTTCCTGCAATCGGGGATGCAGCCCGAAAAAAGGCGCAGTCAAGGCTTGC ATGCCGCATTTTCAAGCGTATTTCCAGTGGTCAGCCACTCGGGTTATGCGGTACTTGAGTATGTGAAATATCGCTTGGGG GAACCCGCTTTCGATGTAAGAGAGTGTCAGCAGCGTGGCGCCACTTATTCCGCTCCGCTTAGAGTGCTGGTGCGGTTGGT GATTTATGACAAGGATGCACCGGCAAACACCAAAGTCGTAAAAGATATACGCGAACAGGAAGTCTACATGGGGGAATTGC CCCTGATGACAGACAACGGCACATTTGTAATCAATGGCACCGAGCGCGTTATTGTTTCGCAATTGCATCGCTCGCCAGGC GTCTTCTTCGACCACGACAAGGGCAAGACTCATTCCTCGGGTAAGCTGTTATTCAATGCACGCGTGATTCCTTACCGCGG CTCGTGGCTGGATTTTGAGTTCGACCATAAAGATGCCGTGTATGTGCGTATCGACAGACGTCGGAAAATCCCCGCGACAA TTTTGTTGCGCGCTTTGGGATATGACAATGAAGAAATGATCAATATTTTCTTCGAAACCAACAAATTTTCGTTGGATGCC GATAAGTTCATGTTCCACGTAATTCCTGACAGATTACGTGGCGAAATGGCGGTATTCGACATCAAACATGACGGGGCTGT TCTTATCGAAGAAGGTCGCCGTATTACCGCTAAACACATCCGTCAGTTGGAAAAAGCCGGCGTTACGGAAATTGAAGTGC CTAGAGATTATCTCTACGGAAAAATTTTGGGACACAATGTCATCGACAAGTCGACAGGCGAATTAATTGCCAATGTCAAT GATGAAATCACCGAGCCGCTGTTACAAAAATTAATCGAGGCTAACGTCAGCGAACTCAATACGCTGTACGTAAATGATTT GGATCGTGGTCCCTACATTTCCAATGCCATGCGCCTGGATACCACCACGAATCGCCTGGAAGCTCTGGTGGAAATCTATC GCATGATGCGTCCCGGCGAGCCGCCGACGGTGGAATCGGCGGAAAACCTGTTTGAAAACTTATTCTTTACCGACGAGCGT TACGATTTGTCCGCCGTAGGCCGGATGAAATTCAATCGCCGTTTGGGCCGCGAAGAAATTGAAGGTACCGGCACCTTGAG CAAGGAAGACATCATTGATGTCTTGAAGGAACTGATCAAGATTAGAAACGGTAATGGCGTTGTAGACGATATCGACCATT TAGGCAACAGACGGGTTAGATCGGTTGGCGAAATGATCGAAAACCAATTCCGCATCGGCTTGGTTAGAGTGGAACGTGCC GTTAGGGAGCGTTTGACACTGGCTGACTCGGAAGGCTTGATGCCGCAAGAGATCATTAATGCGAAACCTGTTTCCGCCGC TGTCAAGGAATTCTTTGGTTCCAGCCAATTGTCGCAGTTTATGGATCAAAACAATCCGCTGTCGCAGGTCACCCATAAAC GCCGCGTATCGGCTTTGGGCCCGGGCGGTTTGGCGCGCGAACGCGCGGGATTCGAGGTGCGTGACGTACACACCACCCAT TACGGCCGGGTATGTCCGATTGAGACGCCTGAGGGGCCGAATATCGGTTTGATCAATTCTTTGTCTGTCTATGCCAGGAC TAATGAATATGGTTTTCTGGAAACACCATACCGTAAGGTGATCAATGGTCAAGTAACGGATCAAGTGGATTATATATCCG CGATTGAGGAAGGCGAGTTCGTTATCGCTCAGGCCAGTGTGGCCGTCGACGAAAACGGCAAATTGGTCGAAGGTTTGGTG TCCTGTCGGCACAAAGACGAGTTTACCTTGGCGTCGTCGGATACCGTGCAGTACATGGACGTGTCTTCCAAGCAGATCGT ATCTGTGGCGGCTTCCATCATTCCGTTCCTTGAACATGATGACGCGAACCGAGCCTTGATGGGATCGAACATGCAACGTC AAGCCGTACCTACTTTACGGGCGGAAAAACCGCTGGTGGGAACAGGCATGGAGCGGGTTGTTGCTAAAGATTCCGGTGTG GCGGTTGTTGCGACTCGCGGCGGTACGATCGAAGCCGTTGATGCGGGCCGTATTGTGGTCAGGGCAAACGACGACGAAAC CATTCCAGGGGTGCCCGGAGTGGACATTTACAATCTGATTAAATATACCCGTTCCAACCAAAACACCTGTATCAACCAAA GACCCTTGGTCAAATTGGGCGATATAGTTACCAAGGGCGATATTTTGGCCGATGGTCCGTCCACTGATCTCGGTGAGTTG GCCTTGGGTCAAAATATGTTGATCGCCTTTATGCCGTGGAATGGTTATAACTTCGAAGATTCGATTTTGGTGTCCGAGCG GGTTGTGAAAGAAGACAGATTTACCACCATACATATTGAAGAAAAAACCTGTGTGGCTCGGGAAACTAAACACAGTCCGG AAGAAATTACCGCCGATATTCCGAACGTCAGTGAAGAAGCGCTTTCCAAACTGGATGAATCGGGCATTGTTTATGTCGGC GCCGAAGTAAAAGGCGGCGATATCCTGGTGGGTAAGGTGACGCCGAAAGGTGAAACTCAACTGACACCGGAGGAAAAACT GCTGCGGGCGATTTTCGGCGAAAAAGCGGCTGATGTAAAAGACACCTCGTTGCGCGTACCGAACAACGTTAGAGGGACGG TTATTGACGTCCAAGTCTTTACTCGCGATGGTGTTAAGAAGGACAAACGTGCGATAGAGATTGAAGAGGCTGAAATCAAA CGTTACCGTAAAGACTTGGACGACCAGTTAAAAATCGTCGAACACGATATCTTTGCTAGGGTAAAAACCTTGTTGATCGG TAAAAAAGCCGAAAAAGGTCCGAACGGTTTGAAAAAAGGCGAAGAAATCACGGTTGCCTATCTGGATGGTCTGACACATT CCGAGTTACTCAAGATCAGAACCCAGGATGAAGACGCAAATGTGCAATTGGAATCTGTTCTAGAACAGATCGAACAGCAG CGTAAAGAGTTTGACGAGCGTTTTGAAACCAAAAAGAAAAAAATCACCATGGGTGATGATTTGGCTCCCGGCGTGTTGAA AATGGTCAAGGTGTATCTGGCTGTTAAAAAACGTATTCAGCCCGGTGACAAAATGGCGGGCCGCCATGGTAACAAGGGTG TTATCTCGCAAATCGTACCAATTGAAGATATGCCTTACACTGCCGACGGTAATCCTGTCGATATTTTGTTGAATCCACTA GGCGTACCTTCCCGGATGAACGTCGGTCAGGTGTTGGAAACGCATCTCGGTTGGGCCGCGAAAGGCTTGGGTATCAAGAT CGGTAAAATGCTGGAAATGCAGGCTAAGGTTAATGAGATTCGCGAGTTTCTGGAAAAAATTTACAACTGTAGCGGCAGGA AAGAAGATCTGGCCTCTTTTTCCGATAAAGAGATTCTTGAGTTGGCGTTGAATTTGGTCGGCGGCGTGCCGATGGCGACC CCTGTATTTGATGGCGCATCTGAAGAAGATATTCGGACCATGTTGCGTCTGGCCGATTTGCCGGAACATGGTCAAACCGT ATTGTACGATGGCTTGACAGGTGAACCTTTCGAGCGCGAAGTGACGGTCGGTTATATGTACATGCTGAAATTGAACCACT TGGTGGATGACAAAATGCATGCGCGCTCAACGGGTCCTTACAGCTTGGTTACTCAGCAACCGTTGGGCGGTAAAGCGCAA TTCGGCGGCCAACGTTTCGGTGAGATGGAGGTATGGGCGTTGGAAGCTTATGGCGCAGCCTATACATTGCAAGAAATGCT GACTGTTAAGTCGGACGATGTGACAGGTAGAACCCGTATGTATAAAAACATTGTCGATGGTAATCACACAATGGAAGCCG GTATGCCGGAATCCTTCAACGTATTAATTAAGGAAATACGTTCGTTAGCAGTCAATATCGAAATGGGGCAGGACTAG Protein sequence : MAYSFTEKKRIRNNFGKGSEVLEVPYLLATQIDSYASFLQSGMQPEKRRSQGLHAAFSSVFPVVSHSGYAVLEYVKYRLG EPAFDVRECQQRGATYSAPLRVLVRLVIYDKDAPANTKVVKDIREQEVYMGELPLMTDNGTFVINGTERVIVSQLHRSPG VFFDHDKGKTHSSGKLLFNARVIPYRGSWLDFEFDHKDAVYVRIDRRRKIPATILLRALGYDNEEMINIFFETNKFSLDA DKFMFHVIPDRLRGEMAVFDIKHDGAVLIEEGRRITAKHIRQLEKAGVTEIEVPRDYLYGKILGHNVIDKSTGELIANVN DEITEPLLQKLIEANVSELNTLYVNDLDRGPYISNAMRLDTTTNRLEALVEIYRMMRPGEPPTVESAENLFENLFFTDER YDLSAVGRMKFNRRLGREEIEGTGTLSKEDIIDVLKELIKIRNGNGVVDDIDHLGNRRVRSVGEMIENQFRIGLVRVERA VRERLTLADSEGLMPQEIINAKPVSAAVKEFFGSSQLSQFMDQNNPLSQVTHKRRVSALGPGGLARERAGFEVRDVHTTH YGRVCPIETPEGPNIGLINSLSVYARTNEYGFLETPYRKVINGQVTDQVDYISAIEEGEFVIAQASVAVDENGKLVEGLV SCRHKDEFTLASSDTVQYMDVSSKQIVSVAASIIPFLEHDDANRALMGSNMQRQAVPTLRAEKPLVGTGMERVVAKDSGV AVVATRGGTIEAVDAGRIVVRANDDETIPGVPGVDIYNLIKYTRSNQNTCINQRPLVKLGDIVTKGDILADGPSTDLGEL ALGQNMLIAFMPWNGYNFEDSILVSERVVKEDRFTTIHIEEKTCVARETKHSPEEITADIPNVSEEALSKLDESGIVYVG AEVKGGDILVGKVTPKGETQLTPEEKLLRAIFGEKAADVKDTSLRVPNNVRGTVIDVQVFTRDGVKKDKRAIEIEEAEIK RYRKDLDDQLKIVEHDIFARVKTLLIGKKAEKGPNGLKKGEEITVAYLDGLTHSELLKIRTQDEDANVQLESVLEQIEQQ RKEFDERFETKKKKITMGDDLAPGVLKMVKVYLAVKKRIQPGDKMAGRHGNKGVISQIVPIEDMPYTADGNPVDILLNPL GVPSRMNVGQVLETHLGWAAKGLGIKIGKMLEMQAKVNEIREFLEKIYNCSGRKEDLASFSDKEILELALNLVGGVPMAT PVFDGASEEDIRTMLRLADLPEHGQTVLYDGLTGEPFEREVTVGYMYMLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQ FGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVTGRTRMYKNIVDGNHTMEAGMPESFNVLIKEIRSLAVNIEMGQD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 69 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 69 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Metme_3823 | YP_004514677.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 72 |
| Metme_3823 | YP_004514677.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 71 |
| Metme_3823 | YP_004514677.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 71 |
| Metme_3823 | YP_004514677.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 71 |
| Metme_3823 | YP_004514677.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 71 |
| Metme_3823 | YP_004514677.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 71 |
| Metme_3823 | YP_004514677.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 71 |
| Metme_3823 | YP_004514677.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 71 |
| Metme_3823 | YP_004514677.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 69 |
| Metme_3823 | YP_004514677.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 69 |
| Metme_3823 | YP_004514677.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 69 |
| Metme_3823 | YP_004514677.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 69 |
| Metme_3823 | YP_004514677.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 69 |
| Metme_3823 | YP_004514677.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 69 |
| Metme_3823 | YP_004514677.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 68 |
| Metme_3823 | YP_004514677.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 66 |
| Metme_3823 | YP_004514677.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 66 |
| Metme_3823 | YP_004514677.1 | DNA-directed RNA polymerase subunit beta | CP001581.1.gene3846. | Protein | 0.0 | 47 |
| Metme_3823 | YP_004514677.1 | DNA-directed RNA polymerase subunit beta | AE016830.1.gene3155. | Protein | 0.0 | 46 |
