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Name : Metme_3939 (Metme_3939) Accession : YP_004514792.1 Strain : Methylomonas methanica MC09 Genome accession: NC_015572 Putative virulence/resistance : Unknown Product : protein-export membrane protein SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 4359281 - 4361128 bp Length : 1848 bp Strand : + Note : KEGG: mca:MCA0683 preprotein translocase subunit SecD; TIGRFAM: SecD export membrane protein; SecD/SecF/SecDF export membrane protein; PFAM: SecD/SecF/SecDF export membrane protein DNA sequence : ATGCAAAATCACTTCCCGCTTTGGAAAAACATCCTGGTCCTGACCGTTCTGGTTTTCGCCCTAATTTATTCGCTGCCCAA TTTATTTGGAAACGATCCTGCGGTGCAACTGGCTTCCAGCAATTCAACTCCGTTGCAACAGGCGCAAGCCGATGAAGTAG CCGCCCTATTGAAAAATGCCGGCTATAACGTCAAGGCTTTTGACTTTAAAGACGGCAAAATCCTGGCTCGCTTCAATAAC ACCGACGAGCAAATGAAAGCCGCGGACTTTCTCAGAAACAAAATGGCCAATCAAGCGACCGTGGCGCTGAATCTGGCCCC GGCCACCCCGGGCTGGTTGAATGCGCTGGGCGCCGAACCCATGTATCTGGGTTTGGACTTGCGCGGCGGCGTGCACTTCC TGCTGGAAGTGGACATGGATACCGCGATTAAACAAGCGGATGAGCGTTACAACAACGATATCCGTAGCGCGTTTAGAGAA GCGAAAGTGCGTTATCAATCCGTCACCAAAGAAGCCAACGGCATCAAAGTAGTACTGCCGGATGAAGAAAACCGGGTGGC GGCAGCGGCGGTATTAAATAAAGACTTCCGTAACCTCGACCTGGCCGAAAGCGGCCCAAACGAGTTCCTGCTGACCATGC CGGAACGGGAAATACTGGCCATCAAGAAATCTGCGTTGGATCAAAACATTACCACTCTGCGTAACCGGGTCAACGAACTG GGCGTCGCGGAACCGATTATTCAGCAACAGGGCAGCAACCGTATCGTGGTGCAATTGCCGGGCGTGCAGGACACGGCCCG TGCCAAGGAATTGTTGGGCACCACCGCCACCCTGGAATACCGTCTGGTGGACGTGGAACATGACGTCAAATCGGCGGTGG AAGGCCATGTACCGGTGGGCAGCCGCGTATATTACGATAAAAACGGAGCACCGCTATTGCTGAAACGCTCGGTTATCGTT ACCGGCGACCAAATCACCGACGCATCCTCCGGTCTGGATCAAGACGGCCAAGCTGCCGTATTCATCACCCTGGACGGTGT CGGCGCCAAGAAAATGGGCAAACTGACCCAAGAAAACATCGGTAAGCCGATGGCGGTGGTATTCATCGAATACAAATCGG ATACGCAAATCGTCGACGGCAAAAAAGTTCAGCACAAGGAAAAAACCGAAAAGGTCATCAGCGTAGCCACCATCCGCGAT TCTTTCAGCAAACGCTTCCAAACCACCGGCCTGGATAATCCGCAGGAAGCCCGCACGCTGGCCTTATTATTAAGAGCCGG CGCCTTGGCGGCCCCGGTGGAAATCGTTGAAGAACGCACCGTCGGCCCCAGCCTGGGTCAGGAAAACATCGATCAAGGCA TGACTTCCATTGAGGTGGGCTTTTTGTTGGTGGTGGTGTTCATGATCATTTATTACCGCGCTTTCGGCTTAATTGCCGAC TTTGCATTGATCTTTAACGTGGTGTTGCTGATCGCGATTTTGTCGTTATTGCAAGCCACGCTGACCTTGCCGGGTATGGC CGGTATCGTATTGACCGTCGGTATGGCGGTGGATGCCAACGTGCTGATTAACGAACGTATCCGCGAGGAACTGCGCAACG GCAACAGTCCGCAAGCCAGTATTTACGTCGGTTACGAAAAAGCCTTCGCCACCATTCTCGACTCCAACGTCACCACCCTG CTGGTGGCCCTGATTCTGTTCGGTTTAGGTACCGGCCCGGTCAAGGGTTTTGCCGTGGTATTGTCTTTGGGCATTCTGAC CTCGATGTTTACCGCCATTACCGGCACCCGTATGCTGGTGAACTGGATCTACGGCGACAACCGCCGCATCGAAAAACTGT CTATCTAA Protein sequence : MQNHFPLWKNILVLTVLVFALIYSLPNLFGNDPAVQLASSNSTPLQQAQADEVAALLKNAGYNVKAFDFKDGKILARFNN TDEQMKAADFLRNKMANQATVALNLAPATPGWLNALGAEPMYLGLDLRGGVHFLLEVDMDTAIKQADERYNNDIRSAFRE AKVRYQSVTKEANGIKVVLPDEENRVAAAAVLNKDFRNLDLAESGPNEFLLTMPEREILAIKKSALDQNITTLRNRVNEL GVAEPIIQQQGSNRIVVQLPGVQDTARAKELLGTTATLEYRLVDVEHDVKSAVEGHVPVGSRVYYDKNGAPLLLKRSVIV TGDQITDASSGLDQDGQAAVFITLDGVGAKKMGKLTQENIGKPMAVVFIEYKSDTQIVDGKKVQHKEKTEKVISVATIRD SFSKRFQTTGLDNPQEARTLALLLRAGALAAPVEIVEERTVGPSLGQENIDQGMTSIEVGFLLVVVFMIIYYRAFGLIAD FALIFNVVLLIAILSLLQATLTLPGMAGIVLTVGMAVDANVLINERIREELRNGNSPQASIYVGYEKAFATILDSNVTTL LVALILFGLGTGPVKGFAVVLSLGILTSMFTAITGTRMLVNWIYGDNRRIEKLSI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 3e-120 | 48 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 7e-120 | 48 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 5e-120 | 48 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 5e-120 | 48 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 5e-120 | 48 |
