Gene Information

Name : Metme_0427 (Metme_0427)
Accession : YP_004511371.1
Strain : Methylomonas methanica MC09
Genome accession: NC_015572
Putative virulence/resistance : Virulence
Product : ECF subfamily RNA polymerase sigma-24 subunit
Function : -
COG functional category : K : Transcription
COG ID : COG1595
EC number : -
Position : 454649 - 455155 bp
Length : 507 bp
Strand : +
Note : KEGG: mms:mma_1233 ECF subfamily RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2

DNA sequence : 
ATGACATCAAAGGGATTAACTGACAGTCACACCATCAGCCAATTATATTCAGATCACCATGATTGGCTTTTACATTGGAT
AGAGCGCAAAGTCTCCTGCCGCTTGCAAGCAGAAGACCATGCGCATGATACTTTTGTGCGCGTCATTGCATCAAAACAAG
CCCCCAACCTGAAGGAGCCTCGCGCTTTCCTGACAACGATCGCAAAAGGTTTGCTGATCGACCACTGGCGACGAAGCGAC
ATAGAACAAGCTTACCTGGAACGCATTACCGCCTATCCGGAAGAAATTGCCATTTCGCCCGAAGAAAATGTCATCATTCT
CGAAGTGTTGCGGGAAATCGATGAATTACTGAATCAACTCCCGGCAAAGGTCCGGCAGGCATTCTTCTTGGCGCATTTTG
AAGATCTCACCGATGCCGAAATTGCCCAAAAATTGGGCGTCAGTGACCGCATGGTCAGAAAATATGTCGCACAAGCCATG
TTGCAATGCTTGAGCGCCGAATTTTAA

Protein sequence : 
MTSKGLTDSHTISQLYSDHHDWLLHWIERKVSCRLQAEDHAHDTFVRVIASKQAPNLKEPRAFLTTIAKGLLIDHWRRSD
IEQAYLERITAYPEEIAISPEENVIILEVLREIDELLNQLPAKVRQAFFLAHFEDLTDAEIAQKLGVSDRMVRKYVAQAM
LQCLSAEF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL08458.1 FecI Virulence SRL Protein 2e-32 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Metme_0427 YP_004511371.1 ECF subfamily RNA polymerase sigma-24 subunit VFG1049 Protein 9e-33 47