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Name : rpoB (TREPR_0930) Accession : YP_004532003.1 Strain : Treponema primitia ZAS-2 Genome accession: NC_015578 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : 2.7.7.6 Position : 3402091 - 3405624 bp Length : 3534 bp Strand : - Note : identified by match to protein family HMM PF00562; match to protein family HMM PF04560; match to protein family HMM PF04561; match to protein family HMM PF04563; match to protein family HMM PF04565; match to protein family HMM TIGR02013 DNA sequence : ATGGTAAAAGGAAAAGCAATTACAAAACGAACATACATCGGAAAGGATATCCAGGACGTGATGGATCTTCCGGATCTCAT TGACATCCAGCTCCATTCCTACGAACGGTTTCTTCAGCGGGAACGGCTGCGTAATAAAGAAGCCCCGGAACAGCAGGGCT TGGAAGAGGTATTCAGAGCAACCTTCCCCATTGAGAGTCCCAACGGTGATATGACCTTGGAATACGAATACTACACTCTT GATGAGGACAATATAAAATTTTCTGAACAGGATTGCAAACAGAAGGGCCTGACCTATGCGGTACCCCTTAAGGCGCGGAT CAACCTGATCTTCCAGCAAACCGGTGAAATCCGTCAGAAGGACATTTACATGGGTGATATCCCGATCATGAGCGAGCGGG GCACCTTTATCATAAACGGAGCGGAACGGGTAGTGGTTTCCCAGATACACCGTTCTCCCGGGGTTATCTTCAGCCATGAG AAGGGTATCTACTCTTCCCGGATCATCCCCTACCGGGGTTCCTGGCTGGAATTTGAGATTGACCAGAAGCGGGAGCTAAT CTACGCAAAGATCGACCGGAAGAAACGTATCCTGGGCACTATTTTTCTCCGGGCCCTGGGCTATGAAAGCCGGGAAGAAA TCATCGCCGCCTTCTATAAAACAGAAACTCTGGAAGTGAAGGATGACCGGGAAACCAGGGAACTGTTCTCCGGAAAGATC CTCGCAGCAAATGTGTGGATTGACGGCGCCGAAGGTGAAGAACGAAAGAAACTCTACCGTGCGGGAGAAAAACTACACCC CCACAATATTGATGAATTCCTGAGCAGCGGGGTTACTTCTGTGGAGGTTATTAATTTTGAGGCCGAAGGGTCTCTCAATT CACCAATGCTGATTAACTGTTTTGAACGGGAAGAGATCAAAATTGTCAAAGAAGATCCTACCCGGGATGAACTTGCCAGA GAAGACGCCCTTTCGTCGGTTTATCAGGTGCTCATGCCCGGAGAATCCATCACCGTGGAACAGGCGGAGAAGGACCTCTT AGGGATGTTCTTTACCTCCCGCCGGTACGATTTAGGAAAGGTGGGGCGGTATAAGCTCAACAAGAAATTTGATATCCGGC CACCCCTGGAAGATTTTACCCTTACCAAGCGGGACATCATTGAGACCATGAAGTTTCTCATCAAGGTATATGTGGGGGAC GAAAGTTTTGACGATATCGACCACCTGGGTAACCGCCGGGTGCGCTCGGTTGGGGAGCTTATGGCCAATGCCATGAAGAC CGCCTTCAGCCGCATGGAACGGATTGCCAAGGAGCGGATGAGCCTGAAAGAAACGGACACCATCAAGCCCCAGGACCTGA TTTCCATCAAGCCTGTGGTGGCTGCCATAAAAGAATTCTACGGCTCCAGCCAGCTCTCCCAGTTCATGGACCAGGTTAAC CCCCTGGCAGAGCTGACCCATAAGCGGAGGCTCAATGCCCTGGGCCCCGGGGGGCTTTCCCGTGACCGGGCAGGCTTTGA GGTCCGGGATGTTCACTATACCCACTACGGCCGCATGTGCCCCATTGAAACCCCGGAAGGGCCGAATATCGGCCTCATCG TGTCCCTGGCGAACTATACCCGGGTGAACGAATACGGCTTCCTGGAAACCCCCTACCGCAAGGTAGCTGACGGGGTTGCC ACCAGGGATATTGAGTACCTGTCCGCCATGGATGAGGACCGGTACTACATAGCCCAGGCCTCAGCAAAACTGAACAATAA CGGTTCTTTTGCGGACGAACAGATTTCCTGCCGTCGCCAGGGGGACTATACCACCAGGGGACCCGCAGAAATCCAGTACA TGGACGTGTCCCCCAAACAGATCATCTCGGTTTCAGCATCCCTGATCCCCTTCCTGGAACATGACGACGCCAACCGGGCC CTGATGGGTTCCAACATGCAGCGTCAGGCAGTGCCCCTGGTGTTCCCCGAGGCACCCCGGGTGGGCACGGGCATGGAAGG GAAGTGCGCCTACGATTCCGGTGTCCTGGCCAAGGCCCGGCGGAACGGGACCGTGGTGCGGGTCACCTCCCATGAAATTA TCATTAAACCCGATGAATCCGGGAAAAATGCCCCCAAAATTCCTGAAACCAATGCAGATGGTCTGGATGAATACCGGCTG GTGAAGTACCAGCGGACCAACCAGGATACCTGCTACAACCAGCGGCCGGTAGTAAAACTGGGGGAGAAAATTGTGGCAGG CCAAGTCATTGCCGACGGTCCCGCTACCCGTTTTGGGGAATTGGCCCTGGGCCGGAACATCCTGGTGGGTTTCATGCCCT GGAACGGGTACAATTACGAAGACTCGATCCTCATCTCCCAGCGGGTGGTGAAGGACGATATGTTTACTTCCATCCATATC AAGGAATTTATCACCGAGGTTCGGGAGACCAAGCTGGGGCCTGAGAAGATCACCCGGGACATCCCTAACACCTCGGAAAA GAGCCTGGACAACCTGGATGCGGAAGGCATTATCCGGGTGGGCGCCAAGGTCAGATCCGGGGATATCCTGGTAGGAAAGG TAACCCCCAAAAGCGAAACCGAGACCACCCCGGAATTCAAGCTCCTCAATTCGATATTCGGCGAAAAGGCCAAGGAAGTG CGGGATTCAAGCCTTCGGGTGCCCCACGGTATTGAGGGAACTATCATCGACATACAGCGGCTGAAACGTTCCGAAGGGGA CGACCTTAACCCCGGTGTGGACGAAGTAGTCAAAGCCCTCATCGCCACCAAGCGGAAACTCCGTGAAGGTGACAAGATGG CAAGCCGCCACGGCAACAAGGGCGTTGTGGCCCGGATATTGCCCGAAGAAGATATGCCCTACATGGAAGACGGCACTCCT TTGGACCTGTGCCTGACCCCCCTGGGTGTACCGTCCCGTATGAACATAGGCCAGCTTTTGGAAACCGAACTGGGCTGGGC GGGATCCACCCTGAACGAGTGGTATTCAGCACCGGTATTTCAGTCCCCCTCCACTGAGCAGATCGAAGATAAGCTCAAGG AAGCGGGGCTCCCGGTTTCTTCCAAGACCGTACTCCGTGACGGCCGCACCGGGGAAGCCTTTGTAAATCAGATTTTCTGC GGGATAATCTACTTCCTCAAACTCCATCACCTGGTGGATGACAAGATGCACGCCCGTTCCACGGGCCCCTACTCACTGGT TACCCAGCAGCCCCTGGGCGGCAAGGCCCAGTTCGGCGGCCAGCGTCTGGGAGAAATGGAAGTCTGGGCCCTGGAAGCCT ACGGCGCGGCCAATACCTTGCAGGAACTGTTGACCATCAAGTCCGACGATATGACGGGCCGCTCCAAGATTTACGAAGCC ATTGTAAAGGGCGAACCTTCCACCACGGCGGGTATCCCCGAATCCTTCAACGTACTGGTACAGGAACTGCGGGGCCTTGC CCTGGACATGACCATCTACGACGCCAAGGGAAAACAGATCCCCCTCACGGAACGTGATGAGGAACTGATAACCAAAAGTG GGTCGAACTTTTAG Protein sequence : MVKGKAITKRTYIGKDIQDVMDLPDLIDIQLHSYERFLQRERLRNKEAPEQQGLEEVFRATFPIESPNGDMTLEYEYYTL DEDNIKFSEQDCKQKGLTYAVPLKARINLIFQQTGEIRQKDIYMGDIPIMSERGTFIINGAERVVVSQIHRSPGVIFSHE KGIYSSRIIPYRGSWLEFEIDQKRELIYAKIDRKKRILGTIFLRALGYESREEIIAAFYKTETLEVKDDRETRELFSGKI LAANVWIDGAEGEERKKLYRAGEKLHPHNIDEFLSSGVTSVEVINFEAEGSLNSPMLINCFEREEIKIVKEDPTRDELAR EDALSSVYQVLMPGESITVEQAEKDLLGMFFTSRRYDLGKVGRYKLNKKFDIRPPLEDFTLTKRDIIETMKFLIKVYVGD ESFDDIDHLGNRRVRSVGELMANAMKTAFSRMERIAKERMSLKETDTIKPQDLISIKPVVAAIKEFYGSSQLSQFMDQVN PLAELTHKRRLNALGPGGLSRDRAGFEVRDVHYTHYGRMCPIETPEGPNIGLIVSLANYTRVNEYGFLETPYRKVADGVA TRDIEYLSAMDEDRYYIAQASAKLNNNGSFADEQISCRRQGDYTTRGPAEIQYMDVSPKQIISVSASLIPFLEHDDANRA LMGSNMQRQAVPLVFPEAPRVGTGMEGKCAYDSGVLAKARRNGTVVRVTSHEIIIKPDESGKNAPKIPETNADGLDEYRL VKYQRTNQDTCYNQRPVVKLGEKIVAGQVIADGPATRFGELALGRNILVGFMPWNGYNYEDSILISQRVVKDDMFTSIHI KEFITEVRETKLGPEKITRDIPNTSEKSLDNLDAEGIIRVGAKVRSGDILVGKVTPKSETETTPEFKLLNSIFGEKAKEV RDSSLRVPHGIEGTIIDIQRLKRSEGDDLNPGVDEVVKALIATKRKLREGDKMASRHGNKGVVARILPEEDMPYMEDGTP LDLCLTPLGVPSRMNIGQLLETELGWAGSTLNEWYSAPVFQSPSTEQIEDKLKEAGLPVSSKTVLRDGRTGEAFVNQIFC GIIYFLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGAANTLQELLTIKSDDMTGRSKIYEA IVKGEPSTTAGIPESFNVLVQELRGLALDMTIYDAKGKQIPLTERDEELITKSGSNF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 47 |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 47 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | YP_004532003.1 | DNA-directed RNA polymerase subunit beta | AE000516.2.gene708.p | Protein | 0.0 | 53 |
| rpoB | YP_004532003.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 49 |
| rpoB | YP_004532003.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 49 |
| rpoB | YP_004532003.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 48 |
| rpoB | YP_004532003.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 48 |
| rpoB | YP_004532003.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 48 |
| rpoB | YP_004532003.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 48 |
| rpoB | YP_004532003.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 47 |
| rpoB | YP_004532003.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 47 |
| rpoB | YP_004532003.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 47 |
| rpoB | YP_004532003.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 47 |
| rpoB | YP_004532003.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 47 |
| rpoB | YP_004532003.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 47 |
| rpoB | YP_004532003.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 47 |
| rpoB | YP_004532003.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 45 |
