|
Name : Thicy_0987 (Thicy_0987) Accession : YP_004537233.1 Strain : Thioalkalimicrobium cyclicum ALM1 Genome accession: NC_015581 Putative virulence/resistance : Unknown Product : protein-export membrane protein SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 1134831 - 1136714 bp Length : 1884 bp Strand : - Note : KEGG: tcx:Tcr_1331 protein-export membrane protein SecD; TIGRFAM: SecD export membrane protein; SecD/SecF/SecDF export membrane protein; PFAM: SecD/SecF/SecDF export membrane protein DNA sequence : ATGTTTGAATCACAACGTCAGATTATTTCAAACCGTTTTCCGGCATGGAAGTATTTGTTGATTATTGCCGTGGTCGTGCT GGGTATTACTTATGCAATGCCCAATCTTTTCGGTGATGACCCATCGGTACAAGTATCCTCAACCCAAGCAGGGCAGTTTA ATGAGCGTACAACCGAGGAAATTGAACAGCGTTTAATTGCCGCAGGTTTAACACCCAAATTGCTCAGCTTTGATGGTAAT CAATATTTGATCCGTTTTGATGATGTTGACACGCAATTACAAGCCAACGACTTAATGCGTGAAATGTTTGGCCGTCAGGC CGTGGTTGCTTTGAATTTAGCACCAGCAACCCCAGGGTTATTGCGAGCTGTAGGTGGGCAGCCTATGTATTTAGGTTTGG ATTTACGCGGTGGCGTCCATTTCTTAATGGATGTTGATATGGACGCGGCAGTCGCCGGTGCCTATCGCCGCTTTGATGAC GAAGTGCGCAATCTATTACGTGATGAACGGGTGCGTTATCAAACGGTTGAATATCAAGATGAAACTTTACGGGTTATTTT TCGTTCAGCCGAGGCGCGTGACCAAGGTTTGGTCATCATTAACCGTGAGATGAGTAACGAATTGCAAACTCGTGCCTTAG ACGAGGGTGAGCAAGCACTGGTTGAAATGCGTTTGGCCTCCAGCGTTATTGCTGAAACCAAGCGATTTGCATTGCAGCAA AACATCACCACGCTTCGTAATCGTATTAACGAGTTGGGTGTTGCAGAGCCGGTGATTCAACAACAGGGCGAGCGGCGGAT TGTGGTGCAATTACCTGGGGTGCAGGATACGGCACGCGCGAAAGAAATTTTAGGCGCAACCGCAACCCTAGAATTCCGTT TAGTGGATGAACGCGGTGATGCGGAACGGGCCGAGCGCACCGGTGCCGTACCACCGAATACCCAATTGTTTAACTTCCGT GATGGTCGTCCGATTTTGTTACAGCGTAATGTGATTGTGACCGGTGAAAGCGTGATTAATGCCCAATCAGGGATTGATGC CCAACAGGGTTCGCCACAAGTCAGTGTTACTCTGGATGGTGCAGGTGGCCGCCGGATGTTGGCAACCACGCGTGACAATA TCGGTAATCGCATGGCGGTGGTGTTTATTGAGAGCCGTGTTGAAACCGTGGAACGTGATGGTGAATTGGTACGTGAACGT ATCGTGACTCGCGATGTTATTAACGCCGCGGTCATTCGTGATCAATTTGCCAATCGTTTCCAAATCACCGGTCTATCAAG TTCACAAGAAGCACAGAACCTAGCGTTGTTACTGCGTGCCGGTGCCTTGGCCGCTCCCATGGAGATTGTCGAGGAGCGTA CGGTTGGACCGAGCTTGGGTCAGGACAATATTAACCAAGGCTTAATGTCGGTGATCTTTGGTTTTATTTTGGTGCTTATT ATCATGGCTTGGCGTTACAAGGCGTTTGGGATGATTGCTAACGTGGCGCTAACCGTTAACTTGGTGGTAATCGTTGCTGT GCTCTCGTTGTTGCAAGCCACCTTAACCTTACCAGGGATTGCTGGGATTGTATTAACCGTCGGGATGGCCGTTGATGCCA ACGTGCTGATATTTGAGCGGATCCGTGAAGAAATGAAAAAGGGCTCGATACAAAATGCCATCCATTCGGGTTATGAAAAA GCTTTTGTGACCATTGCCGATGCCAACATCACCACGCTGATAGCAGCTATTGTGTTATTTAGTTTTGGTACGGGGCCGAT TAAAGGCTTCGCGATTACCCTAAGTATTGGTATCGCGACCTCTATGTTTACCGCTATTCTCTTAACTCGCGGGTTGGTGA ATTGGCGTTATGGTAATAAACGTGTCACCAAGTTGTGGATATAG Protein sequence : MFESQRQIISNRFPAWKYLLIIAVVVLGITYAMPNLFGDDPSVQVSSTQAGQFNERTTEEIEQRLIAAGLTPKLLSFDGN QYLIRFDDVDTQLQANDLMREMFGRQAVVALNLAPATPGLLRAVGGQPMYLGLDLRGGVHFLMDVDMDAAVAGAYRRFDD EVRNLLRDERVRYQTVEYQDETLRVIFRSAEARDQGLVIINREMSNELQTRALDEGEQALVEMRLASSVIAETKRFALQQ NITTLRNRINELGVAEPVIQQQGERRIVVQLPGVQDTARAKEILGATATLEFRLVDERGDAERAERTGAVPPNTQLFNFR DGRPILLQRNVIVTGESVINAQSGIDAQQGSPQVSVTLDGAGGRRMLATTRDNIGNRMAVVFIESRVETVERDGELVRER IVTRDVINAAVIRDQFANRFQITGLSSSQEAQNLALLLRAGALAAPMEIVEERTVGPSLGQDNINQGLMSVIFGFILVLI IMAWRYKAFGMIANVALTVNLVVIVAVLSLLQATLTLPGIAGIVLTVGMAVDANVLIFERIREEMKKGSIQNAIHSGYEK AFVTIADANITTLIAAIVLFSFGTGPIKGFAITLSIGIATSMFTAILLTRGLVNWRYGNKRVTKLWI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 3e-118 | 47 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 3e-118 | 47 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 3e-118 | 47 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 3e-118 | 47 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 1e-118 | 47 |
