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Name : Sinme_1140 (Sinme_1140) Accession : YP_004548505.1 Strain : Genome accession: NC_015590 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : - Position : 1161787 - 1165929 bp Length : 4143 bp Strand : + Note : TIGRFAM: DNA-directed RNA polymerase, beta subunit, bacterial-type; HAMAP: DNA-directed RNA polymerase, beta subunit, bacterial-type; KEGG: smd:Smed_0978 DNA-directed RNA polymerase subunit beta; PFAM: DNA-directed RNA polymerase, subunit 2, domain 6; RNA DNA sequence : ATGGCTCAGACCCTTTCGTTTAACGGTCGTAGGCGCGTACGCAAGTTTTTTGGTAAAATTCCCGAAGTCGCGGAGATGCC GAACCTCATCGAGGTTCAGAAGGCGTCTTACGACCAGTTCCTCATGGTGGACGAGCCCCAAGGCGGACGGCCGGATGAGG GGCTTCAAGCCGTTTTCAAATCGGTATTTCCGATCAAGGATTTCTCCGGCGCTTCGATGCTCGAGTTCGTTTCCTACGAA TTCGAGGCACCGAAGTTCGACGTCGAGGAGTGCCGTCAGCGCGACCTGACCTATGCGGCGCCGCTCAAGGTGACGCTGCG GCTGATCGTGTTCGATATCGACGAGGACACCGGCGCCAAGTCCATCAAGGATATCAAGGAACAGAACGTCTACATGGGCG ACATGCCGCTCATGACGGACAACGGTACCTTCATCGTCAACGGCACGGAGCGCGTCATCGTCTCGCAGATGCACCGGTCG CCGGGTGTCTTCTTCGACCATGACAAGGGCAAGAGCCACTCGTCCGGCAAGCTGCTCTTCGCCGCGCGCGTGATCCCCTA TCGCGGTTCGTGGCTCGACATCGAGTTCGACGCGAAGGACATCGTCCATGCGCGTATCGACCGCCGCCGCAAGATTCCGG TGACGTCGCTTCTGATGGCGCTCGGAATGGACGGCGAAGAAATCCTCGACACCTTCTACACGAAGTCGCTCTACCAGCGC GACGGCGAGGGCTGGCGCGTGCCGTTCCAGCCGGATGCGCTGAAGGGCCAGAAGACACTGGCAGACATGATCGACGCCGA TACCGGCGAGGTCGTTGTCGAGAGCGGCAAGAAGCTGACGCCGCGCCTGCTCCGGCAGTTGCAGGAAAAGGGCCTGAAGG CGCTCAAGGCGACCGACGACGATCTCTACGGCAACTATCTCGCCGAGGACGTCGTCAACTTCGAGACCGGCGAGATCTAT CTCGAGGCCGGTGACGAGATCGACGAGAAGACGCTTCCGGTCATTCTTTCCGCCGGCTTCGATGAGATCCCGGTGCTCGA CATCGACCACATCAATATCGGCGCCTATATCCGCAACACGCTTTCGGCCGACAAGAACGAGAACCGCCAGGACGCGCTGT TCGACATCTACCGCGTCATGCGTCCGGGTGAGCCGCCGACCATGGATTCGGCCGAAGCCATGTTCAATGCGCTCTTCTTC GATGCCGAGCGCTACGATCTCTCGGCCGTCGGCCGCGTGAAGATGAACATGCGCCTCGATCTGGACGTTCCGGACACGGT TCGCACGCTGCGCAAGGAAGACATCCTGGCCGTGGTCAAGATGCTCGTGGAACTGCGTGACGGCAAGGGCGAGATCGACG ACATCGACAACCTCGGCAACCGCCGCGTCCGCTCGGTCGGCGAATTGATGGAGAACCAGTACCGTCTGGGTCTCCTGCGT ATGGAACGTGCGATCAAGGAGCGCATGTCCTCGATCGAGATCGACACCGTGATGCCGCAGGACCTGATCAACGCGAAGCC GGCTGCCGCAGCCGTTCGCGAATTCTTCGGTTCCTCGCAGCTCTCGCAGTTCATGGACCAGGTGAACCCGCTTTCGGAAA TCACCCACAAGCGCCGCCTTTCGGCACTGGGTCCGGGCGGTCTGACCCGCGAACGTGCCGGCTTCGAAGTGCGCGACGTG CATCCGACGCATTACGGCCGTATCTGCCCGATCGAAACGCCGGAAGGCCCCAACATCGGTCTGATCAACTCGCTTGCGAC CTTCGCCCGCGTCAACAAGTACGGCTTCATCGAGAGCCCGTACCGCAAGATCGTCGACGGCAAGGTGACGAACGACGTCG TCTATCTGTCGGCGATGGAAGAAGCGAAGTATCACGTTGCACAGGCAAACTCGGTGCTGGATGACGACGGCTCCTTCTCT GAAGAATTCGTCGTTTGCCGCCACGCCGGCGAAGTCATGCTGGCGCCGCGCGACAACATCAACCTGATGGACGTTTCGCC GAAGCAGCTCGTCTCGGTCGCGGCCGCGCTCATTCCGTTCCTCGAGAACGATGACGCCAACCGCGCGCTGATGGGCTCGA ACATGCAGCGTCAGGCCGTGCCGCTGCTGCGTGCGGAAGCTCCCTTCGTCGGCACCGGCATGGAGCCGGTCGTCGCGCGT GACTCCGGTGCTGCGATCGCTGCCCGCCGCGGCGGTATCGTCGACCAGGTGGACGCGACCCGTATCGTTATCCGCGCCAC CGAAGACCTGGATCCGTCCAAGTCGGGCGTCGATATCTACCGCCTGCAGAAGTTCCAGCGTTCCAACCAGAACACCTGCG TCAACCAGCGCCCGCTGGTCACCGTCGGTGACGTGATCAACAAGGGCGATATCATCGCGGACGGTCCGTCGACCGACCTC GGCGATCTGGCGCTCGGCCGCAACGCCCTCGTCGCGTTCATGCCCTGGAACGGCTACAACTACGAAGACTCGATCCTGCT CTCCGAGCGGATCGTGCGTGACGACGTCTTCACCTCGATCCACATCGAGGAATTCGAAGTGATGGCGCGCGACACCAAGC TTGGTCCGGAAGAAATCACCCGCGACATTCCGAACGTTTCGGAAGAAGCGCTGAAAAACCTGGACGAAGCCGGTATCGTG TACATCGGCGCCGAAGTTCAGCCGGGCGACATCCTCGTCGGCAAGATCACGCCGAAGGGCGAGAGCCCGATGACGCCGGA AGAAAAGCTTCTGCGCGCCATCTTCGGCGAGAAGGCGTCGGACGTTCGCGACACGTCGATGCGCATGCCCCCGGGCACCT TCGGCACGGTCGTCGAAGTGCGCGTCTTCAACCGCCATGGCGTCGAGAAGGACGAGCGCGCGATGGCGATCGAGCGCGAG GAAATCGAGCGTCTCGCGAAGGACCGCGACGACGAGCAGGCGATCCTCGACCGCAACGTCTATGCGCGTCTGGTCGACAT GCTTCGCGGCCACGTCGCCGTTGCCGGTCCGAAGGGCTTCAAGAAGGGCACCGAGCTCTCCAACGTCGTCATCAGTGAAT ATCCCCGCTCGCAGTGGTGGATGTTCGCTATCGAGGACGAGAAGGCTCAGGGCGAGATCGAAGCGCTTCGCGCGCAGTAC GACGAATCCAAGTCGCGCCTTGAACAGCGCTTCATGGATAAGGTCGAGAAGGTTCAGCGCGGCGATGAGATGCCTCCGGG CGTCATGAAGATGGTCAAGGTCTTCGTCGCCGTGAAGCGCAAGATCCAGCCGGGCGACAAGATGGCCGGCCGTCACGGCA ACAAGGGTGTCGTGTCGCGGATCGTGCCGATCGAAGACATGCCGTTCCTGGAAGACGGTACGCATGTCGACGTGGTTCTG AACCCGCTCGGCGTGCCGTCGCGCATGAATGTCGGTCAGATCCTCGAGACCCATCTCGGTTGGGCTTGCGCCGGCATGGG CAAGAAGATCGGAGCGATGCTCGATGCATACAAGGCGGGCGCTGATATCCAGCCGCTGCGCGATACCATCGACAGCGTCA TCGGATCTGGCCCGAAGGGCGAGCCGATCAAGCAGTACGACGATGAATCGATCGTCCGGCTTGCCGAGCAGACCCGCCGC GGCGTTTCGATCGCGACACCGGTCTTCGACGGTGCCGTCGAAGCGGACGTCAACGAGATGCTGGAGCAGGCTGGCCTGAA GGTAACCGGTCAGTCGACGCTCTATGACGGCCGTACCGGCGAGACTTTCGACCGTCAGGTGACCGTGGGCTACATCTACA TGCTGAAGCTCAACCACCTGGTCGACGACAAGATCCACGCCCGTTCGATCGGTCCTTACTCGCTCGTTACCCAGCAGCCG CTGGGCGGCAAGGCGCAGTTCGGCGGTCAGCGCTTCGGCGAAATGGAGGTCTGGGCTCTGGAAGCCTATGGTGCCGCCTA CACGCTGCAGGAAATGCTGACGGTCAAGTCGGACGACGTGGCCGGCCGCACCAAGGTCTACGAGGCGATTGTCCGCGGCG ACGATACCTTCGAAGCGGGCATTCCGGAGAGCTTCAACGTTCTCGTCAAGGAAATGCGCTCGTTGGGCCTTTCGGTCGAG CTGGAGAACTCCAAGGTCGACGACGTCGGTAGCACGGCGCAGCTGCCGGACGCGGCCGAATAA Protein sequence : MAQTLSFNGRRRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVDEPQGGRPDEGLQAVFKSVFPIKDFSGASMLEFVSYE FEAPKFDVEECRQRDLTYAAPLKVTLRLIVFDIDEDTGAKSIKDIKEQNVYMGDMPLMTDNGTFIVNGTERVIVSQMHRS PGVFFDHDKGKSHSSGKLLFAARVIPYRGSWLDIEFDAKDIVHARIDRRRKIPVTSLLMALGMDGEEILDTFYTKSLYQR DGEGWRVPFQPDALKGQKTLADMIDADTGEVVVESGKKLTPRLLRQLQEKGLKALKATDDDLYGNYLAEDVVNFETGEIY LEAGDEIDEKTLPVILSAGFDEIPVLDIDHINIGAYIRNTLSADKNENRQDALFDIYRVMRPGEPPTMDSAEAMFNALFF DAERYDLSAVGRVKMNMRLDLDVPDTVRTLRKEDILAVVKMLVELRDGKGEIDDIDNLGNRRVRSVGELMENQYRLGLLR MERAIKERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQVNPLSEITHKRRLSALGPGGLTRERAGFEVRDV HPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESPYRKIVDGKVTNDVVYLSAMEEAKYHVAQANSVLDDDGSFS EEFVVCRHAGEVMLAPRDNINLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLLRAEAPFVGTGMEPVVAR DSGAAIAARRGGIVDQVDATRIVIRATEDLDPSKSGVDIYRLQKFQRSNQNTCVNQRPLVTVGDVINKGDIIADGPSTDL GDLALGRNALVAFMPWNGYNYEDSILLSERIVRDDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIV YIGAEVQPGDILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTFGTVVEVRVFNRHGVEKDERAMAIERE EIERLAKDRDDEQAILDRNVYARLVDMLRGHVAVAGPKGFKKGTELSNVVISEYPRSQWWMFAIEDEKAQGEIEALRAQY DESKSRLEQRFMDKVEKVQRGDEMPPGVMKMVKVFVAVKRKIQPGDKMAGRHGNKGVVSRIVPIEDMPFLEDGTHVDVVL NPLGVPSRMNVGQILETHLGWACAGMGKKIGAMLDAYKAGADIQPLRDTIDSVIGSGPKGEPIKQYDDESIVRLAEQTRR GVSIATPVFDGAVEADVNEMLEQAGLKVTGQSTLYDGRTGETFDRQVTVGYIYMLKLNHLVDDKIHARSIGPYSLVTQQP LGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLSVE LENSKVDDVGSTAQLPDAAE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 59 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 59 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Sinme_1140 | YP_004548505.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 60 |
| Sinme_1140 | YP_004548505.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 59 |
| Sinme_1140 | YP_004548505.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 59 |
| Sinme_1140 | YP_004548505.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 59 |
| Sinme_1140 | YP_004548505.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 59 |
| Sinme_1140 | YP_004548505.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 59 |
| Sinme_1140 | YP_004548505.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 59 |
| Sinme_1140 | YP_004548505.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 59 |
| Sinme_1140 | YP_004548505.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 59 |
| Sinme_1140 | YP_004548505.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 59 |
| Sinme_1140 | YP_004548505.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 59 |
| Sinme_1140 | YP_004548505.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 59 |
| Sinme_1140 | YP_004548505.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 59 |
| Sinme_1140 | YP_004548505.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 59 |
| Sinme_1140 | YP_004548505.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 58 |
| Sinme_1140 | YP_004548505.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 58 |
| Sinme_1140 | YP_004548505.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 57 |
