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Name : Sphch_3135 (Sphch_3135) Accession : YP_004555257.1 Strain : Genome accession: NC_015594 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : - Position : 262128 - 266294 bp Length : 4167 bp Strand : + Note : TIGRFAM: DNA-directed RNA polymerase, beta subunit, bacterial-type; HAMAP: DNA-directed RNA polymerase subunit beta; KEGG: sjp:SJA_C1-10140 DNA-directed RNA polymerase subunit beta; PFAM: DNA-directed RNA polymerase, subunit 2, domain 6; RNA polymerase Rp DNA sequence : ATGGCGACCAAAGCTCTCCCCACGATCAGCAATACCGGCGCGAAGAAGCGCATCAGGAAGGTGTTCGGCGACATCCACGA AGTGGTGCAGATGCCGAACCTGATCGAGGTCCAGCGGGAGAGCTATGAACAGTTCCTGCGGTCCGACCCGAAGATCGGCT ATGTCTCCGGCCTGGAAAAGACCCTGCGCTCGGTCTTCCCGATCCGCGATTTCGCGGGCACGGCGGAAATGGATTTCGTC CATTATGAGCTGGAAGAGCCGAAATATGACGTCGAGGAATGCCGTCAGCGCGGCATCACCTACGCCGCGCCGATGCGCGT CACGCTGCGCCTGATCGTGTTCGAAGTGGACCAGGACACCGAAACCCGCTCCGTCCTCGATATCAAGGAGCAGGACGTGT ACATGGGCGACATGCCGCTCATGACCGGCAACGGCACGTTCATCGTCAACGGAACCGAGCGCGTCATCGTGTCGCAGATG CACCGTTCGCCGGGCGTGCTGTTCGACCATGACCGTGGCAAAACCCACTCGTCGGGCAAATATCTGTTCGCCGCCCGCGT CATCCCCTATCGCGGTTCCTGGCTCGACTTCGAATTCGACGCCAAGGACATCGTCAACGTCCGCATCGACCGCAAGCGCA AGCTGCCCGTCACCGCCCTACTCTATGCGCTGGGCCTGACGCCGGAGGATATGCTCGGCTATTTCTACAACAAGGTGACC TTCGTCCGCGGTGAAGGCGGCTGGCAGATCCCCTATCTCGCCGAAGCATGGCGCGGCCAGAAGCCCGCCTTCGACATCGT CGACGCCAAGTCGGGCGAAGTCGTGTTCGCCGCCGGTCACAAGATTTCGCCCCGCGCCGCCAACAAGGCGGAGAAGGACG GCCTGGAAACCCTGCTGATCCCGACCGAGGAAGTCTATGGCCGCTACAGCGCCTATGACCTCATCAACGAGACGACCGGC GAAATCTATATCGAGGCGGGCGACGAAGTGTCGCCTGAGAATCTCGAAAAGCTGGACAAGGCGGGCATCGACCGGCTGGA ACTGCTGGACATCGACCATGTCACCACCGGTCCCTGGATCCGCAATACGCTCAAGGCCGACAAGGCCGAGGAACGCGACC AGGCGCTGGCCGACATTTATCGCGTCATGCGCCCCGGCGAACCGCCGACGAAGGAAACCGCCGAAGCGCTGTTCGGCGGT CTCTTCTTCGATCCGGAACGCTACGACCTCTCGGCCGTGGGCCGCGTGAAGCTCAACATGCGTCTCGACCTGGATGCGGA AGATACGGTGACGACGCTGCGGACCGAGGATATCCTCGCCGTGGTCAAGGAACTGGTGAACCTGAAGGACGGCAAGGGCG AGATTGACGATATCGACAATCTGGGCAACCGCCGCGTCCGTTCCGTGGGCGAACTGCTGGAAAACCAGTATCGCGTCGGC CTTCTGCGCATGGAGCGCGCCGTCAAGGAGCGCATGTCGAGCGTCGACGTGTCGACGGTGATGCCGAACGACCTGATCAA CGCGAAGCCCGCCGTGGCCGCCGTGCGTGAATTCTTCGGCTCCAGCCAGCTTTCGCAGTTCATGGACCAGACCAACCCGC TGTCGGAAGTCACCCACAAGCGCCGCGTGTCGGCGCTTGGGCCGGGCGGCCTGACCCGCGAGCGCGCAGGCTTCGAAGTC CGCGACGTCCATCCGACGCACTATGGCCGCATCTGCCCGATCGAAACGCCGGAAGGCCCGAACATCGGTCTGATCAACTC GCTGGCCACCTTCAGCCGCGTGAACAAATATGGCTTCATCGAAACGCCCTACCGCAAGGTGATCGACGGCAAGGTGACGA ACGAGGTCGTCTATCTGTCCGCGATGGAAGAGGCCAAGCACACCATCGCGCAGGCCAACGCGGAACTGAACGCCGACGGC ACGCTGGCCGAAGACCTGATCTCGGCGCGCGAGGCGGGCGAATTCCTGATGGCGCCCAAGGATCACATCACCCTGATGGA CGTCAGCCCGAAGCAGCTCGTTTCGGTCGCGGCCTCGCTCATTCCCTTCCTGGAAAATGACGACGCCAACCGCGCCCTCA TGGGATCGAACATGCAGCGTCAGGCGGTTCCGCTCGTCCGGGCCGAGGCGCCGTTCGTCGGCACCGGCATGGAAGGCACG GTCGCCCGCGACTCCGGCGCGGCCATCGCGGCGCGTCGTGCGGGCATCATCGATCAGGTCGACGCGACCCGCATCGTGAT CCGCGCCACCGGCGACATCGAACCCGGCCAGTCGGGCGTGGACATCTACACGCTCCAGAAGTTCCAGCGTTCGAACCAGG ACACCTGCATCAACCAGCGTCCGCTGGTGAAGGTGGGCGACCTGATCGAGGCGGGCGACGTCATCGCCGACGGTCCGTCG ACCGAGTTCGGCGAACTGGCGCTGGGCCGCAACACGCTGGTCGCGTTCATGCCCTGGAACGGCTATAATTACGAAGACTC CATCCTGATCTCCGAACGGATCGTGAAGGATGACGTCTTCACCTCGATCCATATCGAGGAGTTCGAGGTCATGGCCCGCG ACACCAAGCTGGGGCCGGAAGATATCACCCGCGACATCCCCAACGTCGGCGAGGAAGCGCTGCGCAATCTCGACGAGGCG GGCATCGTCTATATCGGCGCCGAGGTGGAGCCGGGCGACATTCTGGTCGGCAAGATCACGCCCAAGGGCGAATCGCCGAT GACCCCGGAAGAAAAGCTGCTCCGCGCCATCTTCGGCGAAAAGGCGAGCGACGTGCGCGACACCTCGCTGCGTCTGCCGC CGGGCGTGGCCGGAACGGTCGTGGAAGTCCGCGTCTTCAACCGCCACGGCATCGACAAGGACGAGCGCGCCATGGCCATC GAGCGGGAGGAAATCGACCGCCTGGCCAAGGACCGCGAGGACGAACGCGCCATCCTGAACCGCGCCACCTTCAACCGCCT CCAGGAAATGCTGCTCGGTCAGGTCGCCGCTGCCGCGCCCAAGGGCATCAAGAAGGGCGTGGAGATCGACGAGGCGCTGC TGGCCGAGGTCGAGCGTCATGAATGGTGGAAGTTCGCCGTCGCGGACGACAGCCGTCAGGCGGGCATCGAAGCCGTCAAG GCGCAGTATGACGAAGCGGTGAAGCTGATCGTCGAGAAGTTCGAGGATCGCGTCGACAAGCTGCAGCGCGGCGACGAACT GCCGCCGGGCGTGCTCAAGATGGTCAAGGTCTTCGTCGCGGTGAAGCGCAAGCTGCAACCGGGCGACAAGATGGCCGGCC GTCACGGCAACAAGGGCGTCATCTCCCGCATCCTGCCGATCGAGGACATGCCGTTCCTGGAGGACGGCACCCATGTCGAC ATCGTGCTCAATCCGCTGGGCGTGCCGTCGCGCATGAATGTGGGGCAGATCTTCGAAACGCATCTGGGCTGGGCTGCCCG TGGCCTTGGCCAGCAGCTCAAGCATGCGCTGGAGGATTGGCGCGAAGCCAATCCGAACGCGCAGGGCGGCGAGATGCCGG ACGCGGTGAAGACCCGTCTGCTCGAAACCTATGGCCCGCAATATGCCGACCAGATCGAGGGCCGCTCGGCCGAACAGATC GTCGATCTGGCCGAACATCTTGCACGCGGCGTGCCGATGGCGACCCCGGTGTTCGACGGCGCCCGCGAAGCCGACGTGTC GGCGATGCTGGAGCTGGCGGGCCTGCACTCGTCGGGTCAGTCGGACCTGTTCGACGGCCGCACCGGCGACCGGTTCGACC GCAAGGTGACGGTCGGCATCATCTACATGCTGAAACTGCACCACCTGGTCGACGACAAGATCCACGCCCGTTCCATCGGC CCCTACTCGCTCGTCACCCAGCAGCCGCTGGGCGGCAAGGCGCAGTTCGGCGGCCAGCGCTTCGGTGAAATGGAGGTGTG GGCGCTCCAGGCCTATGGCGCCGCCTACACGTTGCAGGAAATGCTGACGGTGAAGTCGGACGACGTGGTCGGCCGCACCA AGGTGTACGAAGCCATCGTCAAGGGCGACGACACGTTCGAGGCGGGCATTCCCGAAAGCTTCAACGTGCTGGTCAAGGAA ATGCGCTCGCTGGGCCTCAACGTCGAACTCGCCGCGATGGACGAGGTCGAGGAAGATGGCGACGGCTTCGCGCAGGCGGC CGAGTAA Protein sequence : MATKALPTISNTGAKKRIRKVFGDIHEVVQMPNLIEVQRESYEQFLRSDPKIGYVSGLEKTLRSVFPIRDFAGTAEMDFV HYELEEPKYDVEECRQRGITYAAPMRVTLRLIVFEVDQDTETRSVLDIKEQDVYMGDMPLMTGNGTFIVNGTERVIVSQM HRSPGVLFDHDRGKTHSSGKYLFAARVIPYRGSWLDFEFDAKDIVNVRIDRKRKLPVTALLYALGLTPEDMLGYFYNKVT FVRGEGGWQIPYLAEAWRGQKPAFDIVDAKSGEVVFAAGHKISPRAANKAEKDGLETLLIPTEEVYGRYSAYDLINETTG EIYIEAGDEVSPENLEKLDKAGIDRLELLDIDHVTTGPWIRNTLKADKAEERDQALADIYRVMRPGEPPTKETAEALFGG LFFDPERYDLSAVGRVKLNMRLDLDAEDTVTTLRTEDILAVVKELVNLKDGKGEIDDIDNLGNRRVRSVGELLENQYRVG LLRMERAVKERMSSVDVSTVMPNDLINAKPAVAAVREFFGSSQLSQFMDQTNPLSEVTHKRRVSALGPGGLTRERAGFEV RDVHPTHYGRICPIETPEGPNIGLINSLATFSRVNKYGFIETPYRKVIDGKVTNEVVYLSAMEEAKHTIAQANAELNADG TLAEDLISAREAGEFLMAPKDHITLMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEGT VARDSGAAIAARRAGIIDQVDATRIVIRATGDIEPGQSGVDIYTLQKFQRSNQDTCINQRPLVKVGDLIEAGDVIADGPS TEFGELALGRNTLVAFMPWNGYNYEDSILISERIVKDDVFTSIHIEEFEVMARDTKLGPEDITRDIPNVGEEALRNLDEA GIVYIGAEVEPGDILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVAGTVVEVRVFNRHGIDKDERAMAI EREEIDRLAKDREDERAILNRATFNRLQEMLLGQVAAAAPKGIKKGVEIDEALLAEVERHEWWKFAVADDSRQAGIEAVK AQYDEAVKLIVEKFEDRVDKLQRGDELPPGVLKMVKVFVAVKRKLQPGDKMAGRHGNKGVISRILPIEDMPFLEDGTHVD IVLNPLGVPSRMNVGQIFETHLGWAARGLGQQLKHALEDWREANPNAQGGEMPDAVKTRLLETYGPQYADQIEGRSAEQI VDLAEHLARGVPMATPVFDGAREADVSAMLELAGLHSSGQSDLFDGRTGDRFDRKVTVGIIYMLKLHHLVDDKIHARSIG PYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLQEMLTVKSDDVVGRTKVYEAIVKGDDTFEAGIPESFNVLVKE MRSLGLNVELAAMDEVEEDGDGFAQAAE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 59 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 59 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Sphch_3135 | YP_004555257.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 60 |
| Sphch_3135 | YP_004555257.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 59 |
| Sphch_3135 | YP_004555257.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 59 |
| Sphch_3135 | YP_004555257.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 59 |
| Sphch_3135 | YP_004555257.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 59 |
| Sphch_3135 | YP_004555257.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 59 |
| Sphch_3135 | YP_004555257.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 59 |
| Sphch_3135 | YP_004555257.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 59 |
| Sphch_3135 | YP_004555257.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 58 |
| Sphch_3135 | YP_004555257.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 58 |
| Sphch_3135 | YP_004555257.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 58 |
| Sphch_3135 | YP_004555257.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 58 |
| Sphch_3135 | YP_004555257.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 58 |
| Sphch_3135 | YP_004555257.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 58 |
| Sphch_3135 | YP_004555257.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 58 |
| Sphch_3135 | YP_004555257.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 58 |
| Sphch_3135 | YP_004555257.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 57 |
