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Name : Lacal_1826 (Lacal_1826) Accession : YP_004580100.1 Strain : Lacinutrix sp. 5H-3-7-4 Genome accession: NC_015638 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : - Position : 2057410 - 2061222 bp Length : 3813 bp Strand : + Note : TIGRFAM: DNA-directed RNA polymerase, beta subunit, bacterial-type; HAMAP: DNA-directed RNA polymerase subunit beta; KEGG: zpr:ZPR_1168 DNA-directed RNA polymerase subunit beta; PFAM: DNA-directed RNA polymerase, subunit 2, domain 6; RNA polymerase Rpb2, DNA sequence : ATGTTAGTAACACAAGCTGAAAGATTAAATTTCTCGTCTATTATTAATAGAACTGAATATCCAGATTTCATGGATATTCA AATAAAATCCTTCCAGGATTTTTTCCAACTTGAAACAAAATCTGAAGAAAGAGGTAATGAAGGATTGTATAATACCTTCA TGGAGAACTTTCCAATCACAGACACACGTAATCAATTCGTATTAGAATTCTTAGATTATTTCGTCGACCCACCAAGATAT GCTATTGAAGAGTGTATAGAAAGAGGACTTACGTATAGCGTTCCATTAAAAGCAAGGTTAAAACTATATTGTACAGATCC TGAACATGAAGATTTCGAAACCATAGTTCAAGATGTGTATTTAGGAACAATACCTTACATGACACCTTCTGGTACTTTTT GTATCAACGGTGCTGAACGTGTAGTAGTATCTCAATTACATAGATCTCCAGGTGTATTTTTTGGACAATCATTCCATGCT AATGGAACAAAATTATATTCAGCAAGAGTAATACCTTTTAAAGGTTCTTGGATTGAATTTGCTACAGATATCAACCAAGT GATGTATGCATACATCGACCGTAAAAAAAAGTTACCTGTTACAACATTATTTAGAGCAATCGGTTTCGAAAGAGATAAAG ATATTCTTGAAATTTTCGACTTAGCCGAAGAGGTTAAAGTTTCTAAATCTGGACTTAAAAAAGTTTTAGGAAGAAAATTA GCTGCACGTGTATTAAATACATGGTATGAAGATTTTGTTGATGAAGATACAGGAGAAGTAGTATCTATTGAGCGTAATGA GATTGTCTTAGACCGTGATACAGAATTAGATAAAGATAACATTGAAGAAATTCTTGAAATAGGTGTAAAAACTATTCTTT TACATAAAGAAACTGCACAACAAGGAGATTACGCAATTATACATAATACGCTTCAAAAAGATCCAACAAACTCTGAAAAA GAAGCCGTAGAACACATCTATAGACAACTACGTAATGCAGAACCGCCAGATGAGGAAACAGCTCGTGGTATTATAGATAA ATTATTCTTTAGTGACCAACGTTACTCTCTTGGAGAAGTAGGTCGTTATAGAATGAATAAAAAATTACAATTAGATATCG GTATGGATAAGCAAGTGCTTACCAAAGAAGATATCATTACAATAATAAAATATTTAATCGAGCTTATTAACTCTAAAGCA GAGATTGATGATATTGATCACTTATCTAACCGTCGTGTACGTACAGTAGGAGAACAATTATCTTCTCAATTTGGTGTTGG TCTTGCTCGTATGGCACGTACAATTCGTGAGCGTATGAACGTTCGTGATAACGAGGTATTTACACCTATCGACTTAATTA ATGCAAAGACATTATCGTCTGTAATTAATTCTTTCTTTGGTACAAACCAGTTATCTCAATTTATGGATCAAACCAATCCA TTAGCCGAGATTACACACAAACGTCGTTTATCAGCTTTAGGACCTGGAGGTTTATCTAGAGAAAGAGCAGGATTCGAGGT TCGTGATGTTCACTATACTCACTACGGAAGACTTTGTCCAATTGAAACTCCAGAAGGACCAAACATTGGATTAATCTCTT CATTATCTGTTTACGCTAAAGTAAACTCTATGGGATTCATTGAAACACCTTATAGAAAAGTTACAGATGGTGTAGTAGAT ATTAAAAGTACACCAACATATTTAAGTGCAGAAGAAGAAGAAGAAAAATTAATTGCGCAAGCAACTGTAGATGTAGATGA AAACGGAAAAATCCTACACGACAAAGTAATTGCTCGTATGGAAGGTGACTTCCCGGTAATGGATCCAAAAGACATTCATT ATACAGATGTTGCACCAAACCAGATTTCTTCAATATCTGCCTCTTTAATTCCGTTTTTAGAACATGATGATGCCAACCGT GCATTAATGGGATCTAACATGATGCGTCAAGCCGTACCATTATTACGTCCGCAAGCACCAATTGTTGGAACAGGATTAGA AAGACAAGTAGCATCAGATTCTCGTGTATTAATTAATGCTGAAGGAAATGGAGTTGTAGAGTATGTTGATGCAAAAGAAA TTATAATCAAGTACGAAAGAACAGAAGATGAAGCTAAAGTAAGTTTTGACAGCGATGTGAAATCTTACCCATTAGTAAAA TTCAGAAAAACAAACCAAGGTACTTCTATTAACTTAAAGCCAATTGTTAAAAAAGGTGATAAAGTTAAAAAAGGCCAAGT TTTATCTGAAGGTTACGCAACACAAAATGGAGAATTAGCTTTAGGTCGAAATATGAAAGTAGCCTTTATGCCTTGGAAAG GGTATAACTTTGAGGATGCAATTGTAATTTCAGAAAAAGTTGTTCGTGAAGACATATTCACATCAATTCATATTGATGAA TATTCTTTAGACGTAAGAGATACAAAATTAGGTAACGAAGAATTAACTAACGATATTCCTAATGTTTCAGAAGAGGCTAC AAAAGACTTAGATGAAAACGGAATGATTCGTATTGGTGCAGAAGTTAAACCAGGAGATATTCTTATTGGAAAAATTACTC CTAAAGGAGAAAGCGATCCAACACCAGAAGAAAAATTACTACGTGCAATCTTTGGAGATAAAGCAGGAGATGTTAAAGAT GCATCATTAAAAGCTTCTCCATCATTACACGGTGTAGTAATTAATAAAAAATTATTTTCTAGAGCAATCAAAGATAAACG TAAGAGAGCTCAAGATAAAGAAGATATTGCACAATTAGAAACAGTATACAATATCAAGTTTGATGAATTACAATCTGTAT TAGTTGAAAAACTATTTGCTATTGTAAACGGAAAAACTTCACAAGGTATATTTAATGATTTAGGAGAAGAAGTTTTACCA AAAGGTAAAAAATTCACACTTAAAATGTTAAATGCTGTTGATGATTATACGCACTTAACAGGTGGAACTTGGACGACTGA TGACCATACAAATAAATTAGTTGCAGATTTAATTCACAACTATAAAATAAAAGAGAACGATTTACAAGGTTCTCTACGTC GTGAGAAATTTACAATTTCTGTAGGTGATGAATTACCAGCAGGAATTATAAAATTAGCAAAAGTATATATTGCTAAAAAA CGTAAGTTAAAAGTAGGAGATAAAATGGCAGGACGTCACGGTAACAAAGGTATTGTTGCACGTATCGTTCGTCAAGAAGA TATGCCTTTCTTAGAAGACGGAACGCCAGTAGATATCGTATTAAACCCATTAGGTGTACCATCGCGTATGAACATTGGGC AAATTTACGAAACAGTACTTGGATGGGCTGGACAAGATTTAGGAAGAACATACGCAACACCAATATTTGACGGTGCTTCT ATAGATCAAATTAATGAATTTACAGATGAAGCTGGAATTCCAAGATACGGTCATACTTACTTATACGATGGTGGAACAGG AGAGCGTTTTGACCAACCAGCAACAGTTGGAGTAATCTACATGCTTAAATTAGGGCATATGGTAGACGATAAAATGCACG CACGTTCTATTGGACCATACTCATTAATTACACAACAACCATTAGGTGGTAAAGCACAATTTGGTGGTCAACGTTTTGGT GAGATGGAGGTTTGGGCACTTGAAGCTTATGGAGCATCAAGCACCCTAAGAGAAATCTTAACAGTAAAATCTGATGATGT AGTTGGTAGAGCCAAAACTTACGAAGCAATCGTAAAAGGTGAACCAATGCCAGATCCAGGATTACCAGAATCTTTTAACG TACTTATGCACGAATTAAAAGGATTAGGATTAGACATTAGATTAGAAGAATAA Protein sequence : MLVTQAERLNFSSIINRTEYPDFMDIQIKSFQDFFQLETKSEERGNEGLYNTFMENFPITDTRNQFVLEFLDYFVDPPRY AIEECIERGLTYSVPLKARLKLYCTDPEHEDFETIVQDVYLGTIPYMTPSGTFCINGAERVVVSQLHRSPGVFFGQSFHA NGTKLYSARVIPFKGSWIEFATDINQVMYAYIDRKKKLPVTTLFRAIGFERDKDILEIFDLAEEVKVSKSGLKKVLGRKL AARVLNTWYEDFVDEDTGEVVSIERNEIVLDRDTELDKDNIEEILEIGVKTILLHKETAQQGDYAIIHNTLQKDPTNSEK EAVEHIYRQLRNAEPPDEETARGIIDKLFFSDQRYSLGEVGRYRMNKKLQLDIGMDKQVLTKEDIITIIKYLIELINSKA EIDDIDHLSNRRVRTVGEQLSSQFGVGLARMARTIRERMNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQTNP LAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLSVYAKVNSMGFIETPYRKVTDGVVD IKSTPTYLSAEEEEEKLIAQATVDVDENGKILHDKVIARMEGDFPVMDPKDIHYTDVAPNQISSISASLIPFLEHDDANR ALMGSNMMRQAVPLLRPQAPIVGTGLERQVASDSRVLINAEGNGVVEYVDAKEIIIKYERTEDEAKVSFDSDVKSYPLVK FRKTNQGTSINLKPIVKKGDKVKKGQVLSEGYATQNGELALGRNMKVAFMPWKGYNFEDAIVISEKVVREDIFTSIHIDE YSLDVRDTKLGNEELTNDIPNVSEEATKDLDENGMIRIGAEVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKD ASLKASPSLHGVVINKKLFSRAIKDKRKRAQDKEDIAQLETVYNIKFDELQSVLVEKLFAIVNGKTSQGIFNDLGEEVLP KGKKFTLKMLNAVDDYTHLTGGTWTTDDHTNKLVADLIHNYKIKENDLQGSLRREKFTISVGDELPAGIIKLAKVYIAKK RKLKVGDKMAGRHGNKGIVARIVRQEDMPFLEDGTPVDIVLNPLGVPSRMNIGQIYETVLGWAGQDLGRTYATPIFDGAS IDQINEFTDEAGIPRYGHTYLYDGGTGERFDQPATVGVIYMLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFG EMEVWALEAYGASSTLREILTVKSDDVVGRAKTYEAIVKGEPMPDPGLPESFNVLMHELKGLGLDIRLEE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 50 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 50 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Lacal_1826 | YP_004580100.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 50 |
| Lacal_1826 | YP_004580100.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 50 |
| Lacal_1826 | YP_004580100.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 50 |
| Lacal_1826 | YP_004580100.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 50 |
| Lacal_1826 | YP_004580100.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 50 |
| Lacal_1826 | YP_004580100.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 50 |
| Lacal_1826 | YP_004580100.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 49 |
| Lacal_1826 | YP_004580100.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 48 |
| Lacal_1826 | YP_004580100.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 48 |
| Lacal_1826 | YP_004580100.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 47 |
| Lacal_1826 | YP_004580100.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 47 |
| Lacal_1826 | YP_004580100.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 47 |
| Lacal_1826 | YP_004580100.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 47 |
| Lacal_1826 | YP_004580100.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 46 |
| Lacal_1826 | YP_004580100.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 46 |
