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Name : Flexsi_0457 (Flexsi_0457) Accession : YP_004602712.1 Strain : Flexistipes sinusarabici DSM 4947 Genome accession: NC_015672 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : - Position : 481577 - 485548 bp Length : 3972 bp Strand : + Note : PFAM: RNA polymerase Rpb2, domain 3; RNA polymerase Rpb2, domain 6; RNA polymerase beta subunit external 1 domain; RNA polymerase Rpb2, domain 2; RNA polymerase beta subunit; RNA polymerase Rpb2, domain 7; TIGRFAM: DNA-directed RNA polymerase, beta subuni DNA sequence : ATGACAAAATCTTCAAATTCCATCGAAAGATTAAATTTTTCAAAAATCAGACAGGAGGTAGATTTACCGGACTTAATCGA AGTCCAGAAGGAATCGTATGCCCAGCTGCTCCAGGAGCATGTACCTTCGCACGAAAGATTGGAGAAAGGTCTGGAGCAGG TATTCAGAGAAGTCTTTCCCATTACCGATTTCAATGAGACATCTATTTTGGAATATGTGAGCTATGCTCTTGATAAAGCA AAATACACTGCATCTGAAGCAATACAGCGTAAAACAACATATGCTGCTCCGCTCAGAGTAAAAGTTCGTTTAGTGAACTA TGATATAGATGAAGAAACTAATGAAAAATCCGTTTTATCGGCAAAAGAGGCTGAAGTTTATCTTTGTGATATTCCATTAA TGACGGAAAGGGGTACATTTGTCATTAACGGTGTGGAAAGGGTAGTTGTTAATCAATTACACCGTTCCCCGGGGATATTT TTTGAAGATGCTACGGCTGGAAAAAGTGTTGTGGAAAAACACTTGTATAGTGCGCGAATAATCCCTTACAGAGGTTCCTG GATAGATTTTGAATTTGATGCAAAAAATGTGATGTACGTCAGAATTGATAAAAAACGGAAGATCCCCGTAACCGTCCTTC TAAAAGCTCTTGGTCTGGATGAACAGAAAATACTCGGTACTTATTACGGTACAGAAACAATACATTTCACTGATGACGGG ATGGTTAAGGATTTTGATCCGGAAAAAATTATTGGCAGAAGAAACAGCTGTGAAATCAAAGATGAAACCGGTGAAATACT TGTAAAAGCTAACTACAAGATTACAAAAGCAGCAAGAAAGAGGCTTGTTAAAGCTGGAATCCAATATATTCCGATAAATA TAGAGGATATTGAAGAAACATATATAGCTGAAGATATTGCTGATCAGGAAGGGGAAATTATTGCAGAGTCAAACACCTCT ATCAGCGAAGAAATTCTTGAAAGGTTGAAAGATAACGATATAGAATCTTTTAAAGTTTTGAGTATTGATAGGCAGTCAAG CGACAGTGCTATAAGAGATATCTTAGCATCTGACAAGGTTAAAACCCAGGAAGAAGCACTTTTGGAAATATACAAAAAGC TGCGTCCAGGTGAGCCGGCCACTCTTGAAACTGCACAGAATCTGTTTGATAATCTATTCTTTAATGAAAAACGTTATGAC CTATCCCGAGTGGGAAGATTGAAGATTAACAAAAGACTGAAATTAAATACACCCCTTGATACAACTACACTGACACCGGA AGATATAGTGGAAACAGTCAGGGTGCTTGACAATATAAGACAGGGGCTCGATAAAGTAGATGACATCGACCACCTCGGTC ACAGACGGGTCAGGGCTGTGGGTGAACAGCTTCAGAATCATATAAGAATCGGCCTTACCAGGATGGAAAAAACTGTAAAA GAAAGGATGAGTATTCAGGATATAGAGGAGTTGTCTCCTCAGGATCTCCTTAATGCCAAGCCTCTTTCTGCTTCCATAAA AGAATTTTTCGGAAGTTACCAGCTTTCGCAATTTATGGATCAGACAAATCCTCTAAGTGAGGTTACGAATAAAAGGAGAC TTTCGGCATTGGGGCCCGGAGGACTTAACAGAGAAAGAGCGGGTTTTGAAGTAAGGGATGTTCATACATCTCACTACGGC AGAATCTGCCCTATTGAAACACCTGAAGGTCCCAATATCGGTTTGATAACCTCTTTAACGACTTTCGCCCGGATAAATGA ATTCGGTTTTATTGAAACACCTTACAGAAAAGTTGAAAACAACAGAGTAACGGATGACGTTGTCTACATGTCAGCCATTG AAGAAGAGGATTTTTGCATTGCGCAGGCTAATGCACCTTTGGATGAAAATGGATATTTTATCAGAGACGTTGTGGCCTCA AGGTACAAAGGAGAGTCGGTTACTTCGCCTAAGGAAGATATTCAATATATGGACGTTGCACCGATGCAGATAGTTTCGGT TTCCACTGCACTTGTTCCTTTTCTGGAACATGATGATGCTAACAGGGCACTTATGGGATCTAACATGCAGCGTCAGGCGG TACCGCTGGTCAAGACAGATGCACCGATAGTCGGCACCGGCATGGAGAGCAAAGTTGCCAAAGATTCAGGAGCCGTAATA ACTGCGAAAAATGCAGGATATGTGGATTACGTAGATGCTGAGAAGGTTGTCATTCGCTATGAGAAAGAGGATGATTTCGG AATAGATGTTTACGAACTTGTAAAATACAGAAGATCCAATCAGGACACATGCATCAATTACAAACCAATTGTTAATAAAA ACGACTATGTGGCAAAAGGCGATCCTATTGCTGACGGTCCTGCTACAGACAGGGGTGATCTTGCTCTGGGCAGGAATGTT ATTGTGGCGTTTATGCCATGGATGGGTTACAACTACGAAGACTCAATTCTGGTTTCTGAAAAACTCGTAAAAGAGGATGC TTTTACTTCCATTCATATCGAGGAATACGAAGTTGAAGCCAGAGATACCAAACTGGGACCTGAAGAAATTACCAGAGATA TACCAAATGTGAGTGAGGAAGCACTTGCTAACCTGGATGAAAGCGGTATCATAAGAACGGGTGCTCAGGTTAGTGAGGGT GAAATCCTGGTGGGAAAGGTCACTCCCAAAGGAGAGTCTCAGTCCACGCCCGAGGAAAAATTACTCAGGGCAATTTTCGG TGAAAAAGCCGGGGACGTAAAAGATGCCTCACTAAGGGTTCCACCTGGTATTACAGGTACAGTTGTCGATGTCCAGTGTA TGACAAGACGCGGTGTGGAAAAGGATGAGAGAACTGAAGAAATTGAGCACGAAGAGTACGAGAAGATAAAGTACGACTAT AAGAAGAAGCTGGAATCTCTTGAAGTGGCAAGAAAGAATAAAATAGTCGACTTGCTGAGCGGCAAAACTCTGCAGGATTC ATTCGAAACGGAAAGTGTGAAGCTTGATGCCGGCAGCAAACTTACCAAAAAAGTGTTAAACAAGCTTGACTATTCGGAGC TTGTAATGCTGCCTGTAAAGAAAAAGAATGAATTCGAAAATAAATTGTCGCAGATAAACGCCATATATTTTGATAGAATC AAAATGGTTGAGGAAGATTTTAAGGATTTAAAATCGAAAGTTGAGAAAGGCGATGAACTTCCTGCCGGTGTCTTAAAGTC CGTCAGGGTTTATATCGCTGTTAAACGCAAGCTAATGGTAGGCGATAAAATGGCGGGAAGACATGGAAATAAAGGTGTTA TCTCCAGAATACTGCCTGAAGAGGATATGCCGTTCCTGCCCGATGGTACCCCTGCTGAAATTGCACTGAACCCCCTTGGT GTTCCATCCCGTATGAACGTGGGACAGGTATTGGAAACACACCTGGGGTGGGCTGCAAGAGCACTCGGTCTGCATATTGC TACACCGGTGTTTGACAGTGCACAGGAATCAGATATTAAAGAAATGTTGAAAAAGAGCGGGTTCCAGGCAGACGGACAGA CGGTTCTTTTTGACGGAAGGACAGGTGAACGCTTTGATCAGGAAGTCACTGTTGGTGTAATGTATATACTAAAGCTTCAT CATCTTGTGGAAACCAAAATCCACGCCAGATCTACAGGTCCGTATTCATTGGTTACCCAGCAGCCTCTTGGAGGCAAGGC TCAATTCGGCGGTCAGAGACTTGGTGAAATGGAAGTCTGGGCGCTTGAAGCCTACGGGGCGGCCCATGTGCTTCAGGAGA TGCTGACTGTTAAATCGGATGATGTTGAAGGAAGAACAAAGGTTTATGAAGCAATTGTTAACGGTAATCTGGACTTTGAG GCAAGCATGCCCGAGTCTTTTAACGTTCTGATAAAGGAACTGCAAGGTCTGGCACTCGATGTTGAGCTAATGACAAAAGA AGAGCTCGACAAAGAGGAAACGACAGAAAAAGTTGATGAAATAGAAAATTAA Protein sequence : MTKSSNSIERLNFSKIRQEVDLPDLIEVQKESYAQLLQEHVPSHERLEKGLEQVFREVFPITDFNETSILEYVSYALDKA KYTASEAIQRKTTYAAPLRVKVRLVNYDIDEETNEKSVLSAKEAEVYLCDIPLMTERGTFVINGVERVVVNQLHRSPGIF FEDATAGKSVVEKHLYSARIIPYRGSWIDFEFDAKNVMYVRIDKKRKIPVTVLLKALGLDEQKILGTYYGTETIHFTDDG MVKDFDPEKIIGRRNSCEIKDETGEILVKANYKITKAARKRLVKAGIQYIPINIEDIEETYIAEDIADQEGEIIAESNTS ISEEILERLKDNDIESFKVLSIDRQSSDSAIRDILASDKVKTQEEALLEIYKKLRPGEPATLETAQNLFDNLFFNEKRYD LSRVGRLKINKRLKLNTPLDTTTLTPEDIVETVRVLDNIRQGLDKVDDIDHLGHRRVRAVGEQLQNHIRIGLTRMEKTVK ERMSIQDIEELSPQDLLNAKPLSASIKEFFGSYQLSQFMDQTNPLSEVTNKRRLSALGPGGLNRERAGFEVRDVHTSHYG RICPIETPEGPNIGLITSLTTFARINEFGFIETPYRKVENNRVTDDVVYMSAIEEEDFCIAQANAPLDENGYFIRDVVAS RYKGESVTSPKEDIQYMDVAPMQIVSVSTALVPFLEHDDANRALMGSNMQRQAVPLVKTDAPIVGTGMESKVAKDSGAVI TAKNAGYVDYVDAEKVVIRYEKEDDFGIDVYELVKYRRSNQDTCINYKPIVNKNDYVAKGDPIADGPATDRGDLALGRNV IVAFMPWMGYNYEDSILVSEKLVKEDAFTSIHIEEYEVEARDTKLGPEEITRDIPNVSEEALANLDESGIIRTGAQVSEG EILVGKVTPKGESQSTPEEKLLRAIFGEKAGDVKDASLRVPPGITGTVVDVQCMTRRGVEKDERTEEIEHEEYEKIKYDY KKKLESLEVARKNKIVDLLSGKTLQDSFETESVKLDAGSKLTKKVLNKLDYSELVMLPVKKKNEFENKLSQINAIYFDRI KMVEEDFKDLKSKVEKGDELPAGVLKSVRVYIAVKRKLMVGDKMAGRHGNKGVISRILPEEDMPFLPDGTPAEIALNPLG VPSRMNVGQVLETHLGWAARALGLHIATPVFDSAQESDIKEMLKKSGFQADGQTVLFDGRTGERFDQEVTVGVMYILKLH HLVETKIHARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGAAHVLQEMLTVKSDDVEGRTKVYEAIVNGNLDFE ASMPESFNVLIKELQGLALDVELMTKEELDKEETTEKVDEIEN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 53 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 53 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Flexsi_0457 | YP_004602712.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 53 |
| Flexsi_0457 | YP_004602712.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 53 |
| Flexsi_0457 | YP_004602712.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 53 |
| Flexsi_0457 | YP_004602712.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 53 |
| Flexsi_0457 | YP_004602712.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 53 |
| Flexsi_0457 | YP_004602712.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 53 |
| Flexsi_0457 | YP_004602712.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 53 |
| Flexsi_0457 | YP_004602712.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 52 |
| Flexsi_0457 | YP_004602712.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 51 |
| Flexsi_0457 | YP_004602712.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 51 |
| Flexsi_0457 | YP_004602712.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 51 |
| Flexsi_0457 | YP_004602712.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 51 |
| Flexsi_0457 | YP_004602712.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 51 |
| Flexsi_0457 | YP_004602712.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 51 |
| Flexsi_0457 | YP_004602712.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 51 |
| Flexsi_0457 | YP_004602712.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 50 |
| Flexsi_0457 | YP_004602712.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 49 |
| Flexsi_0457 | YP_004602712.1 | DNA-directed RNA polymerase subunit beta | NC_012469.1.7686402. | Protein | 2e-168 | 42 |
