|
Name : rpoB (Rta_35690) Accession : YP_004620703.1 Strain : Ramlibacter tataouinensis TTB310 Genome accession: NC_015677 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : - Position : 3809283 - 3813395 bp Length : 4113 bp Strand : - Note : - DNA sequence : ATGGCCTATTCCTATACCGAACGCAAGCGCATCCGCAAAAGCTTCGGCAGCCGCGACAGCGTGCTGGAAGTCCCCTACCT GCTCCAGATGCAGAAGGACGCTTACACCGCCTTCCTGCAGGCCGACATGGCACCCCAGAAACGCACCATCGAAGGCCTCC AGGCCGCCTTCGATGCCGCCTTCCCCATCGTCTCGCACAACGGCTTTGTCGAGATGAAGTTCATCGAATACAACCTGGCC AAGCCCGCGTTCGACGTGCGCGAGTGCCAGACCCGCGGCCTGACCTATGCCTCGGCCGTGCGCGCCAAGGTCCAGCTGAT CATCTACGACCGCGAGTCCTCCACGCCCCAGTCCAAGGTGGTCAAGGAAGTGAAGGAGCAGGAAGTCTACATGGGCGAAG TGCCGCTCATGACGGACAAGGGCTCGTTCATCATCAACGGCACCGAGCGCGTGATCGTCTCGCAGCTGCACCGCTCGCCC GGCGTGTTCTTCGAGCACGACAAAGGCAAAACGCACAGCTCGGGCAAGCTGCTGTTCAGCGCCCGCATCATCCCGTACCG CGGCTCCTGGCTGGACTTCGAGTTCGACCCCAAGGACGTGCTGTACTTCCGCGTCGACCGTCGCCGCAAGATGCCGGTCA CCATCCTGCTCAAGGCCATCGGCCTGACGCCCGAGTCCATCCTGGCGAACTTCTTCGTCAACGACAACTTCCGCCTGATG GACAGCGGCGCGCAGATGGAGTTCGTGCCCGAGCGCCTGCGCGGCGAGGTGGCCCGCTTCGACATCACCGACAAGTCCGG CAAGGTCGTCGTGGCCAAGGACAAGCGCGTCACCGCCCGCCACACCCGCGAGCTGGAGCAGAGCGGCACCACGCACATCA GCGTGCCCGAGGACTACCTCGTCGGCCGCGTGGTGGCGCGCGCCATCGTCGACCAGGACACCGGCGAGATCATCGCCAAG GCCAACGACGAGCTGACCGAGGCACTGCTGAAGAAGCTGCGCGCCGCCGGCGTGCAGGACCTGCAGGTCATCTACACCAA CGAGCTCGACCAGGGCCCGTACATCAGCCAGACGCTGCGCATCGACGAAACGGTGGACGAGTTCGCCGCCCGCGTCGCCA TCTACCGCATGATGCGCCCCGGCGAGCCGCCGACCGAGGACGCGGTGCAGGCCCTGTTCCAGCGCCTGTTCTACAACCCG GACACCTACGACCTGTCGCGCGTGGGCCGCATGAAGTTCAACGCCAAGGTCGGGCGCGACGAGAGCACCGGCCCCATGGT CCTGACCAACGAGGACATCCTCGCCGTGGTCAAGATCCTGGTGGACCTGCGCAACGGCCGCGGCGAAGTGGACGACATCG ACCACCTGGGCAACCGCCGCGTGCGCTGCGTCGGCGAGCTGGCCGAGAACCAGTACCGCACCGGCCTGGCCCGCATCGAG AAGGCCGTCAAGGAGCGCCTCGGCCAGGCCGAGCAGGAACCGCTGATGCCGCACGACCTGATCAACTCCAAGCCGATCTC CGCGGCGCTCAAGGAGTTCTTCGGCGCCTCGCAGCTGTCGCAGTTCATGGACCAGACCAACCCGCTGTCCGAGATCACGC ACAAGCGCCGCGTCTCGGCCCTGGGCCCGGGCGGCCTGACGCGCGAGCGCGCGGGCTTCGAGGTGCGCGACGTGCACGTC ACGCACTACGGCCGCGTCTGCCCGATCGAGACGCCGGAAGGCCCCAACATCGGCCTGATCAACTCGCTGGCCCTGTACGC CCGCCTGAACGAGTACGGCTTCATCGAGACGCCGTACCGCCGGGTGGCGGACGGCAAGGTCACCAACGAGATCGACTATC TGTCGGCCATCGAGGAGGGCAAGTACGTCATCGCCCAGGCCAACGCGGCGCTGGACAAGGAAGGCCGCCTGACCGGCGAC CTGGTGTCCGCCCGCGAGCGCGGCGAATCGGTGCTGGTGACGGCCGACACCATCCAGTACATGGACGTGTCGCCGGCGCA GATCGTGTCGGTGGCCGCCTCGCTGGTGCCCTTCCTGGAGCACGACGACGCCAACCGCGCGCTGATGGGCGCCAACATGC AGCGCCAGGCCGTGCCGGTGCTGCGTCCCGAGAAGGCCTTCGTGGGCACCGGCATCGAGCGCGTCTCCGCGGTCGACTCC GGCACCGTGGTCACCGCCACCCGCGGCGGCGTGGTCGACTACGTCGACGCCACCCGCATCGTGGTGCGCGTGAACGACGA GGAAGCCGCGGCCGGCGAGGTCGGCGTGGACATCTACAACCTGATCAAGTACCAGCGTTCCAACCAGAACACCAACATCC ACCAGCGTCCCATCGTCAAGCGCGGCGACAAGATCGCCAAGGGCGACGTGGTGGCCGACGGCGCCTCGACCGACCTGGGC GAGCTCGCGCTGGGCCAGAACATGCTGGTGGCGTTCATGCCCTGGAACGGCTACAACTTCGAGGACTCGATCCTGATCAG CGAGCGCGTGGTGGCCGATGACCGCTACACCTCCATCCACATCGAGGAGCTGGTGGTGATGGCGCGCGACACCAAGCTGG GCGCCGAGGAGATCACCCGCGACATCCCCAACCTGTCCGAGCAGCAGCTCAACCGCCTGGACGAGAGCGGCATCATCTAC GTGGGCGCCGAGGTCATGCCGGGCGACACGCTGGTGGGCAAGGTCACGCCCAAGGGCGAGACCACGCTGACGCCGGAAGA AAAGCTGCTGCGCGCCATCTTCGGCGAGAAGGCCTCCGACGTGAAGGACACCTCGCTGCGCGTGGACCAGGGCTCGCAGG GCACGGTCATCGACGTGCAGGTGTTCACCCGCGAGGGCATCCAGCGCGACAAGCGCGCCCAGCAGATCATCGACGACGAA CTCAAGCGCTTCCGCCTGGACCTGAACGACCAGCTGCGCATCGTCGAGGCCGACGCGTTCGACCGCATCGAGAAGCTGCT GACCGGCAAGGTCGCCAACGGCGGCCCGCAGAAGCTGGCCAAGGGCACCAAGATCGACAAGGCCTACATGGCGTCGATCG AGAAGTACCACTGGTTCGACATCCGGCCCGCAGACGACGAGGTGGCTTCCCAGCTGGAATCGATCAAGAACTCGATCGAG CAGCAGCGCCACAGCTTCGACCTGGCCTTCGAGGAGAAGCGCAAGAAGCTGACCCAGGGCGACGAGCTGCCGGCCGGCGT GCTGAAGATGGTCAAGGTCTACCTGGCCGTCAAGCGCCGCCTGCAGCCCGGCGACAAGATGGCCGGCCGCCACGGCAACA AGGGCGTGGTGTCCAAGATCGTCCCGGTCGAGGACATGCCCTACATGGCCGACGGCACGCCGTGCGACATCGTGCTCAAC CCGCTGGGCGTGCCTTCGCGCATGAACGTGGGCCAGGTGCTGGAAGTGCACCTGGGCTGGGCCGCCAAGGGCATCGGCCA GCGCATCGGCGACATGCTGCAGCAGCAGGCCCGCGCGGCCGAACTGCGCAGGTTCATGGACGAGCTGTACAACAAGTCGG GCCGCAAGGAAGACCTGGCCAAGCTGGCGGACGCCGACGTGCTGGAGATGGCCGGCGAGCTGGCCAAGGGCATCCCGTTC GCGACCCCGGTGTTCGACGGTGCTTCGGAAGAAGAGATCCGCCGCATGCTGCAGCTGGCCTTCCCGGAGGACGTGGCCAA GGCCAAGGGCCTGACCGCGACGCGGACCCAGGCGCATCTGTACGACGGCCGCACCGGCGACCAGTTCGAGCGCCCGGTCA CCGTGGGCTACATGCACGTGCTCAAGCTGCACCACCTGGTGGACGACAAGATGCACGCGCGCTCGACCGGCCCGTACTCG CTGGTCACGCAGCAGCCGCTGGGCGGCAAGGCGCAATTCGGCGGCCAGCGCTTCGGCGAGATGGAGGTGTGGGCGCTGGA GGCCTATGGCGCCGCCTACACGCTGCAGGAGATGCTCACCGTCAAGTCCGACGACGTGCAGGGCCGCACCAAGGTGTACG AGTCCATCGTCAAGGGCGAGCACGCCATCGACGCCGGCATGCCGGAGTCGTTCAACGTCCTGGTCAAGGAGATCCGCTCC CTGGGCCTGGACATGGAACTCGAGCGTTCTTAA Protein sequence : MAYSYTERKRIRKSFGSRDSVLEVPYLLQMQKDAYTAFLQADMAPQKRTIEGLQAAFDAAFPIVSHNGFVEMKFIEYNLA KPAFDVRECQTRGLTYASAVRAKVQLIIYDRESSTPQSKVVKEVKEQEVYMGEVPLMTDKGSFIINGTERVIVSQLHRSP GVFFEHDKGKTHSSGKLLFSARIIPYRGSWLDFEFDPKDVLYFRVDRRRKMPVTILLKAIGLTPESILANFFVNDNFRLM DSGAQMEFVPERLRGEVARFDITDKSGKVVVAKDKRVTARHTRELEQSGTTHISVPEDYLVGRVVARAIVDQDTGEIIAK ANDELTEALLKKLRAAGVQDLQVIYTNELDQGPYISQTLRIDETVDEFAARVAIYRMMRPGEPPTEDAVQALFQRLFYNP DTYDLSRVGRMKFNAKVGRDESTGPMVLTNEDILAVVKILVDLRNGRGEVDDIDHLGNRRVRCVGELAENQYRTGLARIE KAVKERLGQAEQEPLMPHDLINSKPISAALKEFFGASQLSQFMDQTNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHV THYGRVCPIETPEGPNIGLINSLALYARLNEYGFIETPYRRVADGKVTNEIDYLSAIEEGKYVIAQANAALDKEGRLTGD LVSARERGESVLVTADTIQYMDVSPAQIVSVAASLVPFLEHDDANRALMGANMQRQAVPVLRPEKAFVGTGIERVSAVDS GTVVTATRGGVVDYVDATRIVVRVNDEEAAAGEVGVDIYNLIKYQRSNQNTNIHQRPIVKRGDKIAKGDVVADGASTDLG ELALGQNMLVAFMPWNGYNFEDSILISERVVADDRYTSIHIEELVVMARDTKLGAEEITRDIPNLSEQQLNRLDESGIIY VGAEVMPGDTLVGKVTPKGETTLTPEEKLLRAIFGEKASDVKDTSLRVDQGSQGTVIDVQVFTREGIQRDKRAQQIIDDE LKRFRLDLNDQLRIVEADAFDRIEKLLTGKVANGGPQKLAKGTKIDKAYMASIEKYHWFDIRPADDEVASQLESIKNSIE QQRHSFDLAFEEKRKKLTQGDELPAGVLKMVKVYLAVKRRLQPGDKMAGRHGNKGVVSKIVPVEDMPYMADGTPCDIVLN PLGVPSRMNVGQVLEVHLGWAAKGIGQRIGDMLQQQARAAELRRFMDELYNKSGRKEDLAKLADADVLEMAGELAKGIPF ATPVFDGASEEEIRRMLQLAFPEDVAKAKGLTATRTQAHLYDGRTGDQFERPVTVGYMHVLKLHHLVDDKMHARSTGPYS LVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVQGRTKVYESIVKGEHAIDAGMPESFNVLVKEIRS LGLDMELERS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 63 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 63 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | YP_004620703.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 78 |
| rpoB | YP_004620703.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 74 |
| rpoB | YP_004620703.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 71 |
| rpoB | YP_004620703.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 66 |
| rpoB | YP_004620703.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 64 |
| rpoB | YP_004620703.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 64 |
| rpoB | YP_004620703.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 64 |
| rpoB | YP_004620703.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 64 |
| rpoB | YP_004620703.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 64 |
| rpoB | YP_004620703.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 64 |
| rpoB | YP_004620703.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 63 |
| rpoB | YP_004620703.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 63 |
| rpoB | YP_004620703.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 63 |
| rpoB | YP_004620703.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 63 |
| rpoB | YP_004620703.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 63 |
| rpoB | YP_004620703.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 63 |
| rpoB | YP_004620703.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 63 |
| rpoB | YP_004620703.1 | DNA-directed RNA polymerase subunit beta | AM180355.1.gene120.p | Protein | 0.0 | 44 |
