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Name : Thein_0273 (Thein_0273) Accession : YP_004625121.1 Strain : Thermodesulfatator indicus DSM 15286 Genome accession: NC_015681 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : - Position : 291434 - 295525 bp Length : 4092 bp Strand : - Note : COGs: COG0085 DNA-directed RNA polymerase beta subunit/140 kD subunit; InterProIPR007644:IPR007642:IPR007645:IPR019462:IPR 007120:IPR007641:IPR010243:IPR007121; KEGG: sfu:Sfum_1549 DNA-directed RNA polymerase, beta subunit; PFAM: RNA polymerase Rpb2 domai DNA sequence : ATGTCAGAAGATCTTAGCATTATTCCCGGCCGTGTACGTAAAAATTTTGGTCGTGTTAAGCCTATCCTTGATGTGCCCTA TCTTATAGCCATTCAAAAAGAATCTTACAAGCGTTTTTTGCAAGCTGATGTAGCTCCAGAAGCCAGAGAAGAAAGTGGTA TTCAAGGGGCATTAAAAAGCGTTTTTCCAATTGTAGATTACACTGGTACCTGTGAACTTGAATTCGTAGATTATTCTATT TTACCTCCCAAATATACACCTGATGAATGCCGTGAAAAGGGGCTTACCTATGAAGCTCCCATGCGGCTTAGGGTGCGCTT GCTTACTTATGACATAGATCCTGATACAGGTGACAAAAGTATTCGCGATATCAAAGAGCAGGAAATCTATTTTGGCACTG TACCTTTAATGACGGAAGATGGGCTTTTTATCATTAATGGTACGGAAAGAGTAGTAGTTAACCAACTTCAGCGCTCTCCG GGTATATTTTTTGATCATGACAAGGGAAAAACTCATGCCAGTGGTAAAGTACTTTATTCGGCAAGGGTTATTCCCACTCG TGGTTCCTGGCTTGATTTTGAGTTTGACCACCGTGATTATCTTTATGTTCGCATAGATCGCCGTCGTCGCTTTCCGGTAA CAACCTTTTTAAAGGCTCTTGGATTATCTACTGAAGAAATACTTACTACTTTTTATCCAATCGAAAAATACATTATTAAG CCCAATAGCATCGAAAAGATAGTAAATCCTGAGACATTGCTTGGGCAAAAGGCCCTTCTCGATATTTATCATCCTGAGAC AGGGGAAGTCATTTTAAAGAAAGGACGCAAGATTACCAAGGCGGCTTTAAAACGCATTCAAGAGGCCGGTCTAGAGACCA TTCCTGTACCTGAGGAAGAATTCTTGGGTAAGGTGGTGGCTAGAGACGTAATAGACCCTAACACCGGCGAAGTTATTATT TCTTGCAATGCGGTAGTTGATAAAGAAACCCTTGAGAGATTGCGAGAAGCCGGCATTGAAGAGATAGAGTGTCTTTATAT GAGTCTTCACCGTCATACACCTTGTTTACGCGATACCCTTACTTTAGACAAAGCTCACACGCAGGAAGAGGCCTTGATAG AGATTTACCGCCGTCTTCGTCCTTCAAGTCCGGCCAACCTTGAAGTAGCTAGAGCTTATTTCCAGTCACTCTTTTTCGAT CCAAGTACGTATGACCTTTCAGAAGTTGGCCGTTATAAAATGAACAAACGTTTGGGACTTGATATTCCCATAAATGTTCG TGTGCTTACTAAAGAAGATATTTTAGCCACTTTAAAGCATCTTATTTATCTTAAAGAAATTGAAGGCCCGGTAGATGATA TTGACCATCTTGGTAATCGTCGGGTGCGTTCGGTGGGAGAGCTTGTTGAGAATCAGATGCGGGTAGGTTTAGTGCGTATG GAGCGGGCTATTCGTGAGCGCATGACTTTGCAGGATGTAGAAGCCCTTATGCCTAATGATCTTATAAACCCCAAACCGGT CACCTCTGCTTTAAGAGAATTTTTCGGGCAAGGCCAGCTTTCTCAGTTTATGGATCAGACCAATCCACTTTCCATGATGA CGCACAAGCGTCGTCTTTCGGCCTTAGGTCCTGGTGGACTTACCAGAGAGCGGGCTGGTTTTGAAGTACGAGACGTTCAT CATACCCATTACGGCCGTATTTGTCCTATTGAGACACCAGAAGGTCCTAATATCGGACTTATCGTCTCTCTTACTACCTA TGCTAAGATAAATCGCTATGGCTTTATAGAGACCCCGTATCGCAAGGTGCTAAATGGCAAGGTAACCAACGAAGTTGTCT ATATGAGTGCCCTTGATGAGGGAGATAACATTATCGCTCAGGCCACTATAGAAATAGACAAAGATGGAAATATTATCCAG GAGCTTGTCCCGGCACGTAAGGCTGGTGATTTCATAATGGCTCCCAAAGAAACGGTGAATTACATTGATCTTACGCCGGT TCAGGTAGTCAGTGTTTCTTCTTCTTTGATCCCGTTTCTTGAGCATGATGACGCTAACCGTGCGCTCATGGGGTCTAACA TGCAGCGTCAGGCAGTGCCATTAATTCGCACCGAGGCTCCGCTGGTAGGCACCGGCATGGAAAAGTACGTGGCGCGTGAC TCCGGGTTTACCATTATTGCTGAGGCTGACGGTGTGGTTGAAGATCTTGATGCTACTCGTTTAGTGGTACGTTACGAAAC TGAAAACGGGGATATCCCAGAAGTAAAGATCTATAAGCTTATTAAGTGGCGCAAGTCTAATCAAAATACCACCTTTACTC AGAAGCCAGTGGTGCAACCTGGTCAGAGGATAAAAAAAGGCCAGGTCTTGGTTGACGGTCCTTCTACCAGCCAGGGTGAA ATTGCTCTAGGGAAAAACATCCTGGTGGCTTTCATGCCCTGGCGTGGTTATAACTTTGAAGACTCCATTGTTATTTCTGA ACGGCTGGTACGTGACGATGTTTTTACCTCTATTCATATAGAAGAATTTGAGTGTATCGCTCGGGAGACTAAGCTTGGGC GTGAAGAAATTACCCGTGATATTCCAAACGTAGGAGAAGAGGCCTTAGAACGCCTTGATGCCAGCGGTATTGTTAAGGTT GGTGCCTATGTAAAGCCAGGAGATATTCTGGTTGGTAAAGTAACTCCTAAGGGGGAGACCCAGCTTTCACCTGAAGAAAA GCTTCTCAGGGCCATTTTTGGTGAAAAGGCAAGTGATGTAAAAGACACTTCTTTAAGGGTGCCTCCTGGCATTGAAGGAA TCGTGATAGACGCCAAAGTCTTTACGCGCAAAGGCCTTGAAAAAGACGCTCGGGCCAAAGAAATAGAAGACCGTGAAATT GCAAGGCTTCTTAAAGATCAGGAAGAATTTTTAGAAGTGTTACGTCGGAGTATTTTGAAGCGTCTTGAGCGCCATCTCAC TGGAAAGACGGCGGCGGCTACTATAGAAGTCAGAGGCGAGGTAGTTATAGAGAAAGGGGAGCCTATTACACCTGAAGTTC TGGCCAAGGTTCCTTTTATGAAGATCCGTGAATTGGCTGGCGGCCGTAAGAAGGATCCGGTTGTAGAAGATATTTTGCGT GATTACGAAGCCAAAGAAGCACAAATTAGAAAACAGATCGAAGAACGCATCAATCGTATGAAGAAGGGAGATGAGTTGCC TCCTGGAGTTCTTAAAGTGGTAAAAGTTTATGTGGCTATGAAGCGCAAGCTTCAGCCAGGAGATAAAATGGCTGGTCGTC ACGGAAACAAAGGTGTGGTTTCCAAGGTGGTACCCATTGAGGATATGCCCTATCTCCCTGATGGTACTCCAGTAGACATG GTACTTTCTCCACTGGGAGTGCCTTCTCGTATGAATATTGGGCAGATCCTTGAAACACATCTCGGCTGGGCTTCTAAGGA AGTTGGTAAAAAGATAGCCGAATTAGCTAAAGCCTATCAGGTAGAAGCAGTAAAGCAATTTCTGGCGGAAATTTTCGGGC CAGAAGAGCTTGAAGAGTTTCTTAGAGATAAGACCGATGAAGACATCTTGCGTTTTGCTGCTACCTTTGAAGATGGTTTG GCGGTAGCTACGCCAGTATTTGATGGCGCTAAAGAGCCACAAATCAAAAAGCTCCTTAAGCTAGCTGGCCTTTCTGAAAC TGGTCAGACAGTGCTTTACGATGGTATGTCAGGAGAACCTTTCCGCGAGCCGGTGACAGTGGGTTATATGTATATGCTAA AGCTTCATCACCTGGTGGAAGACAAGATTCATGCTCGTTCTACCGGGCCTTACTCCCTTATTACCCAGCAGCCGCTTGGT GGAAAGGCCCAGTTTGGTGGGCAGCGTCTCGGTGAGATGGAAGTCTGGGCCATGGAGGCTTACGGAGCAGCTTATGCCCT TCAGGAGTTCCTTACCGTTAAAAGTGACGATGTAACTGGCCGTACCCGTATGTATGAGCGCATTGTTAAAGGGAATAATT TCCTTGAAGCAGGTCTTCCTGAAAGCTTCAAAGTATTGGTTAAAGAACTCCAGGGTCTTTGCCTTGACGTAGAGATGATT GAAGAAGAATAA Protein sequence : MSEDLSIIPGRVRKNFGRVKPILDVPYLIAIQKESYKRFLQADVAPEAREESGIQGALKSVFPIVDYTGTCELEFVDYSI LPPKYTPDECREKGLTYEAPMRLRVRLLTYDIDPDTGDKSIRDIKEQEIYFGTVPLMTEDGLFIINGTERVVVNQLQRSP GIFFDHDKGKTHASGKVLYSARVIPTRGSWLDFEFDHRDYLYVRIDRRRRFPVTTFLKALGLSTEEILTTFYPIEKYIIK PNSIEKIVNPETLLGQKALLDIYHPETGEVILKKGRKITKAALKRIQEAGLETIPVPEEEFLGKVVARDVIDPNTGEVII SCNAVVDKETLERLREAGIEEIECLYMSLHRHTPCLRDTLTLDKAHTQEEALIEIYRRLRPSSPANLEVARAYFQSLFFD PSTYDLSEVGRYKMNKRLGLDIPINVRVLTKEDILATLKHLIYLKEIEGPVDDIDHLGNRRVRSVGELVENQMRVGLVRM ERAIRERMTLQDVEALMPNDLINPKPVTSALREFFGQGQLSQFMDQTNPLSMMTHKRRLSALGPGGLTRERAGFEVRDVH HTHYGRICPIETPEGPNIGLIVSLTTYAKINRYGFIETPYRKVLNGKVTNEVVYMSALDEGDNIIAQATIEIDKDGNIIQ ELVPARKAGDFIMAPKETVNYIDLTPVQVVSVSSSLIPFLEHDDANRALMGSNMQRQAVPLIRTEAPLVGTGMEKYVARD SGFTIIAEADGVVEDLDATRLVVRYETENGDIPEVKIYKLIKWRKSNQNTTFTQKPVVQPGQRIKKGQVLVDGPSTSQGE IALGKNILVAFMPWRGYNFEDSIVISERLVRDDVFTSIHIEEFECIARETKLGREEITRDIPNVGEEALERLDASGIVKV GAYVKPGDILVGKVTPKGETQLSPEEKLLRAIFGEKASDVKDTSLRVPPGIEGIVIDAKVFTRKGLEKDARAKEIEDREI ARLLKDQEEFLEVLRRSILKRLERHLTGKTAAATIEVRGEVVIEKGEPITPEVLAKVPFMKIRELAGGRKKDPVVEDILR DYEAKEAQIRKQIEERINRMKKGDELPPGVLKVVKVYVAMKRKLQPGDKMAGRHGNKGVVSKVVPIEDMPYLPDGTPVDM VLSPLGVPSRMNIGQILETHLGWASKEVGKKIAELAKAYQVEAVKQFLAEIFGPEELEEFLRDKTDEDILRFAATFEDGL AVATPVFDGAKEPQIKKLLKLAGLSETGQTVLYDGMSGEPFREPVTVGYMYMLKLHHLVEDKIHARSTGPYSLITQQPLG GKAQFGGQRLGEMEVWAMEAYGAAYALQEFLTVKSDDVTGRTRMYERIVKGNNFLEAGLPESFKVLVKELQGLCLDVEMI EEE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 55 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 55 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Thein_0273 | YP_004625121.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 56 |
| Thein_0273 | YP_004625121.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 56 |
| Thein_0273 | YP_004625121.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 55 |
| Thein_0273 | YP_004625121.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 55 |
| Thein_0273 | YP_004625121.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 55 |
| Thein_0273 | YP_004625121.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 55 |
| Thein_0273 | YP_004625121.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 55 |
| Thein_0273 | YP_004625121.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 55 |
| Thein_0273 | YP_004625121.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 55 |
| Thein_0273 | YP_004625121.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 55 |
| Thein_0273 | YP_004625121.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 55 |
| Thein_0273 | YP_004625121.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 55 |
| Thein_0273 | YP_004625121.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 55 |
| Thein_0273 | YP_004625121.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 55 |
| Thein_0273 | YP_004625121.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 54 |
| Thein_0273 | YP_004625121.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 54 |
| Thein_0273 | YP_004625121.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 53 |
| Thein_0273 | YP_004625121.1 | DNA-directed RNA polymerase subunit beta | CP001581.1.gene3846. | Protein | 0.0 | 47 |
