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Name : TOPB45_0164 (TOPB45_0164) Accession : YP_004627207.1 Strain : Thermodesulfobacterium geofontis OPB45 Genome accession: NC_015682 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : - Position : 154890 - 158978 bp Length : 4089 bp Strand : - Note : TIGRFAM: DNA-directed RNA polymerase, beta subunit, bacterial-type; HAMAP: DNA-directed RNA polymerase subunit beta; KEGG: sfu:Sfum_1549 DNA-directed RNA polymerase subunit beta; PFAM: DNA-directed RNA polymerase, subunit 2, domain 6; RNA polymerase Rpb2, DNA sequence : ATGTCCCATAATACTAATCAGAGACCCAAAATAAGAAAAAGTTTTGTAAAGGTCCAACAAATTCAGGATTTACCAGATCT TTTAAAAATTCCTAAGGAATCTTATCAGAAATTTTTACAAGCAAATACCCCTCCAGATAGAAGACAGGATGTAGGAATTC ATAGATGTTTTTCTACAGTTTTTCCTATAAAAGATTATTCAGACATAGCTGTTTTGGAATATTTAGATTATAAAATCTTA CCTCCAGAATATACGCCAGATGAAGCTAAGGAGAAAGGATTAACTTATGAAGCTCCAATGAAATTAAGAGTACGTTTAGT AACTTATGATCTTGATCCAGAAACTGGAGTGAAAAGTATAAAGGATATAAAAGAACAGGAAATCTATTTTGGTACAATTC CTCTTATGACAGAAGATGGAAGATTTATTATAAATGGTACCGAAAGAGCTGTAGTTAATCAACTTCAAAGGTCTCCCGGA GTAATTTTTGAAAAGGATAAAACCCATGCTAAGGCTGGTAGATTAACTTATATTGGAAGAGTAATTCCTGTAAAAGGTTC TTGGTTAGATTTTATATATGATTATAGAGGGAGATTTTTGGTAAGAATTGATAAAAGGAAAAATATTCCTGCAACGGTAT TTTTAAAAGCTATGGGATTATCGGAAGAGGAGATCCTTTCTTTATTTTACCCAACAGAAAAATATAGAATTTTAGAAGAA GGGGTAGAAAAGGAGTTAAATTATGAACTTTTAGCTGGGCAAAAAGCTCCTATAGATATTGTTCATCCAGAAACAGGGGA AGTTTTAGTAAAAAAAGGAAAAGTAATAAGTGCTGGAATAATTAAAAGATTGAAGCAGTCAGGAATAAATGTTTTGAAAC TCCCTGATGAAATGCTAATTGGTAAATTTTGTGCCAAAGAAATTGTAGATAAAGAGACAGGAGAAGTATTACTTGAGGTA AATGAAGAAATTACTGAAGAAAAACTTAAATTACTAAGAGAAAAAAACATAAAAGAAGTAGAAGTTCTTTTTGTAGATGC CTACCGTTATTCTTCAGCTTTAAGAGATGCTCTTAAAACTGATAAGGTAAAAAGTAAAGAAGAAGCTTTAATAGAAATTT TTAGAAAAATGAAACCCGCAAGTCCTGTAACTCCAGAAATAGCAGAAGCCTATTTTAGATCTCTATTTTTTGATCCGTCA ACTTATGATCTCTCTGAAATTGGAAGATATAAAATAAACTTGAGACTGAATTTAGATCTTCCTATTACTCAAAGAACCCT AACCTTAGAAGATGTGATTGCAATTTTGAAAGAGCTAATCCGCATGAAAGAGAATGAGGAAGAAGGAGATGATATAGATA GTTTAGCTAATAGGAGGGTTAGATCTGTAGGTGAATTAGTGGAAAATCAGTTTTTAATTGGTTTAATGAGAATGGAAAGA ATTATTAAAGAGAAGCTTCAACTCCAAGAGATAGAAACTTTAACCCCTGCAGAACTTATAAATAGCAAACCTGTTATGGC AGCAGTAAAAGAATTTTTTGCTCAAGGGCAGTTATCTCAATTTATGGATCAAACTAATGTACTTTCTATGATTACTCATA AAAGGAGACTTTCTGCACTTGGACCAGGTGGTTTAACAAGAGAAAGAGCCGGTTTTGAAGTTAGAGATGTTCACCCCAGT CATTATGGGAGAATCTGTCCTATTGAGACTCCAGAAGGTCCAAATATTGGATTAATTGTTTCTCCAACTACTTATGCTCA GGTAAATCCTTATGGTTTTTTAGAAACTCCTTATAGATTAGTAAGAAACGGAAAGGTTACAAAACAGGTTATATATTTGA ATGCTGCTGAAGAAAAAAACCTTATAATTGCTCAATCAACTATTAGAATTGATAAAGAAGGGAATATTTTAGATGAATAT GTTCCAGCAAGGAAAAACGGAGAATTTATTATTGCTCATAGAGATGAAGTTGATTTAGTTGATTTATTTCCTGCTCAAAT AGTAAGTGTTTCAACTTCGCTTATTCCGTTTTTAGAACATGATGATGCAAATAGAGCACTTATGGGTTCTAACATGCAAA GACAGGCTGTACCATTGCTTATTCCCAAAGCGCCTCTTATTGGTTCTGGAATGGAAAAATCAATTGCTTTAAATTCTGGA TTCCTTTTAGTGGCTGAAAAAGATGGAGTTGTAGAAGATGTGGATAGTACAAGAATTGTAGTAAGATATGATAAAGAGGA TGGCCTCTTACCAGAAATAAAAATTTACGAACTTATTAAATGGAGAAAATCAAATCAAAATACTACTTTCAATCAAAGAC CTATTGTAAAACCAGGACAAAGGATAAAAAAAGGGGATATCTTAGCAGATGGACCATCTATGGATCACGGAGAGCTTGCT TTAGGTAAAGATGTACTTGTAGCTTTTATGCCTTGGAAAGGATATAATTTTGAGGATTCTATTATTATTTCAGAAAGATT GGTAAGAGATGATGTATTCACTTCTATACATATTGAAGAATTTGAATGTATAGCAAGGGAAACCAAATTAGGTAGAGAAG AAATAACAAGAGATCTTCCCAATGTAGGAGAAGAACTTATATCTAATTTAGATGAAAGTGGCATTATAAAAATTGGAAGT TTTGTAAAACCGGGAGATATTCTTGTAGGAAAAGTAACACCTAAAGGGGAAACTACTCTTACTCCTGAAGAAAAACTTTT AAGAGCTATTTTTGGAGAAAAAGCAAAGGATGTAAAAGATACTTCTTTAAGAGTTCCCGCTGGAATTGAGGGAATTGTAA TAGATACTAAAGTTTTAACCAGAAAGGGTTTAGAAAAGGATATAAGAGCTAAACAAAAAGAAGACGAAGCAATAGCTAAA TTATTGAGAAATCAAGCAGATATTTTAGAGATTTTAAAAAGAGGTCTGGTTACAAAACTTTCTCAGATTTTAGAGGGTGA GAAGGCGGTAAAAGATTTAGAAAAGGAAGGAGATATTTACATTAGAAAGAAAGAACCCTTTTCTTTTAAACTCCTTGATT CAATTCCAGCACCTATACTTTCAAAATTAAAAGATGTTGTTCCTCCATCTAAAAAAGAAATAGTTTCTGAATTATTAGAA GTGTATGAAAAAAGAAGAAAAGAAATCATTGAGGAGTATGAGGCTAAAATAAACAAAATTAAAAAGGGAGATGAACTTCC TCCTGGTGTTCTAAAAATTGTAAAAGTATATGTAGCTATGAAAAGAAAGCTTCAGCCAGGAGATAAAATGGCAGGAAGAC ATGGGAATAAAGGTGTTATTTCTAAGGTTGTTCCTATAGAGGATATGCCTTATCTTCCAGATGGAACTCCTGTAGATATG ATACTTTCTCCTTTAGGAGTCCCTTCTCGTATGAATATAGGACAACTTTTAGAAACCCATTTGGGATGGGCTTGTAAAGA ACTTGGGAAGAAACTTGCAAAGCTTGCACAAGATTATCAAGTAGAAAGTGTAAAAAGTCTTTTAAAAGAAATTTTTAGTG AAGAGGAATATGAAAGATTAGTTGAGGGTAAAAGTGATGAAGAGATAATAGAGTTAGCTAAAGGATTTATAGATGGTATT CCTGTTGCAACTCCTGTTTTTGCAGGTGCTAAAGAAGAGGAAATTAAAAAATGGTTAAAGCTTGCTGGTTTAGATCCAAG TGGAACGACTATACTTTATGATGGTATGACAGGAGAGCCTTTTAAAGAGCCTGTCACAGTAGGGTATATGCATATGCTCA AACTTCACCACTTAGTAGATGATAAAATTCATGCCCGTTCCACTGGTCCTTATTCTTTGATTACTCAACAGCCTCTTGGT GGAAAGTCTCAATTTGGTGGTCAAAGATTAGGAGAAATGGAAGTTTGGGCAATAGAAGCTTATGGAGCAGCTTATACTCT TCATGAATTTCTTACTGTCAAAAGTGATGATGTAGAAGGTAGAGCAAAAATGTATGAAAAATTGGTTAGAGGGAAAAACT TTTTAGAGGGAGGTATGCCTGAAAGTTTTAGAGTTTTAACTAAGGAATTACAAGGGCTTTGCCTTGATATTGAATTAATA GAAGAATAA Protein sequence : MSHNTNQRPKIRKSFVKVQQIQDLPDLLKIPKESYQKFLQANTPPDRRQDVGIHRCFSTVFPIKDYSDIAVLEYLDYKIL PPEYTPDEAKEKGLTYEAPMKLRVRLVTYDLDPETGVKSIKDIKEQEIYFGTIPLMTEDGRFIINGTERAVVNQLQRSPG VIFEKDKTHAKAGRLTYIGRVIPVKGSWLDFIYDYRGRFLVRIDKRKNIPATVFLKAMGLSEEEILSLFYPTEKYRILEE GVEKELNYELLAGQKAPIDIVHPETGEVLVKKGKVISAGIIKRLKQSGINVLKLPDEMLIGKFCAKEIVDKETGEVLLEV NEEITEEKLKLLREKNIKEVEVLFVDAYRYSSALRDALKTDKVKSKEEALIEIFRKMKPASPVTPEIAEAYFRSLFFDPS TYDLSEIGRYKINLRLNLDLPITQRTLTLEDVIAILKELIRMKENEEEGDDIDSLANRRVRSVGELVENQFLIGLMRMER IIKEKLQLQEIETLTPAELINSKPVMAAVKEFFAQGQLSQFMDQTNVLSMITHKRRLSALGPGGLTRERAGFEVRDVHPS HYGRICPIETPEGPNIGLIVSPTTYAQVNPYGFLETPYRLVRNGKVTKQVIYLNAAEEKNLIIAQSTIRIDKEGNILDEY VPARKNGEFIIAHRDEVDLVDLFPAQIVSVSTSLIPFLEHDDANRALMGSNMQRQAVPLLIPKAPLIGSGMEKSIALNSG FLLVAEKDGVVEDVDSTRIVVRYDKEDGLLPEIKIYELIKWRKSNQNTTFNQRPIVKPGQRIKKGDILADGPSMDHGELA LGKDVLVAFMPWKGYNFEDSIIISERLVRDDVFTSIHIEEFECIARETKLGREEITRDLPNVGEELISNLDESGIIKIGS FVKPGDILVGKVTPKGETTLTPEEKLLRAIFGEKAKDVKDTSLRVPAGIEGIVIDTKVLTRKGLEKDIRAKQKEDEAIAK LLRNQADILEILKRGLVTKLSQILEGEKAVKDLEKEGDIYIRKKEPFSFKLLDSIPAPILSKLKDVVPPSKKEIVSELLE VYEKRRKEIIEEYEAKINKIKKGDELPPGVLKIVKVYVAMKRKLQPGDKMAGRHGNKGVISKVVPIEDMPYLPDGTPVDM ILSPLGVPSRMNIGQLLETHLGWACKELGKKLAKLAQDYQVESVKSLLKEIFSEEEYERLVEGKSDEEIIELAKGFIDGI PVATPVFAGAKEEEIKKWLKLAGLDPSGTTILYDGMTGEPFKEPVTVGYMHMLKLHHLVDDKIHARSTGPYSLITQQPLG GKSQFGGQRLGEMEVWAIEAYGAAYTLHEFLTVKSDDVEGRAKMYEKLVRGKNFLEGGMPESFRVLTKELQGLCLDIELI EE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 52 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 52 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| TOPB45_0164 | YP_004627207.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 54 |
| TOPB45_0164 | YP_004627207.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 52 |
| TOPB45_0164 | YP_004627207.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 52 |
| TOPB45_0164 | YP_004627207.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 52 |
| TOPB45_0164 | YP_004627207.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 52 |
| TOPB45_0164 | YP_004627207.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 52 |
| TOPB45_0164 | YP_004627207.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 52 |
| TOPB45_0164 | YP_004627207.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 52 |
| TOPB45_0164 | YP_004627207.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 52 |
| TOPB45_0164 | YP_004627207.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 52 |
| TOPB45_0164 | YP_004627207.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 52 |
| TOPB45_0164 | YP_004627207.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 52 |
| TOPB45_0164 | YP_004627207.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 52 |
| TOPB45_0164 | YP_004627207.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 52 |
| TOPB45_0164 | YP_004627207.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 52 |
| TOPB45_0164 | YP_004627207.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 51 |
| TOPB45_0164 | YP_004627207.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 50 |
