|
Name : F7308_0643 (F7308_0643) Accession : YP_004647170.1 Strain : Francisella sp. TX077308 Genome accession: NC_015696 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : 2.7.7.6 Position : 644182 - 648258 bp Length : 4077 bp Strand : + Note : - DNA sequence : ATGTCTTACTCATACGCTGAGAAAAAAAGAATTCGCAAAGAGTTTGGGGTTCTTCCTCATATCTTAGATGTGCCATATTT ACTTTCCGTTCAAACAGAGTCTTATAAGAAATTTTTAAATGCAGATGATGCAAAAGGTAGACTTCACTCTGGTCTTGAAT TAGTGTTAAAGCAATCTTTTCCTGTCGAAAGTAAAAATGGTCAATATGAACTTCATTATGTTGATTATCAAATTGGGGAA CCTACTTTTGATGAAACAGAGTGTCAAGTCCGCGGTGCTACATATGATGCGCCATTAAATGTAAAGTTAAGGTTGGTTGT ATATAATAAAGAAGCTCTTCCTAACGAAAAGGTTGTAGAAGATATTAGAGAAGAATATGTCTACATGGGAGATATTCCTC TTATGACAATTAACGGTACTTTTATAATTAACGGTACTGAAAGAGTTGTTGTTTCACAATTACATAGATCTCCTGGTGTA TTCTTTAGCAAGGATGATTCAGAAGATGGAGCGTTTTCGGCGCGCATTATCCCATACAGAGGTTCATGGCTTGATTTTGA GTTTGACTCCAAAGGTATTGTATGGGCTAGAATTGATAGAAAGAGAAAGTTTTGCGCTACAGTGATTTTAAAAGCTCTTG GATATACACAAGAGGAGATACTAAGTAATTTCTCTGATAGTAAGACAATTAGTTTTGATAATAAAGGTTTTGCACTTAAG CTTGATAATTTATCAGGAATGAAAGGTGAAGTGCTTAAATTTGATATTGTTGATGAAAATGATAAGACAATAGTCAAGAA AAATAAGAAATTAACATCTAGAGATATCAAGAAAATCAAAGACGCAGGCGTTGACTCTGTAGCAATTGATTTTGATTTGG TTAGTACTCTTAGAGTAGCAAAAGACATTGTTAATGAGGTAACAGGTGAAGTTATAGCTTACGCTAATGACGATGTTACA GAAAGTTTATTAGAAGCGTGTGTAGAAGTTGGCATGCTTGAATTAGAAGTTATTGATTTTATAACTACTGAAAGAGGTAG ATATATATCAGATACTCTTAAATACGATCTTACTAAAAATACAGATGAAGCACTTGTAGAAATATATAAAGTTCTTAGAC CAGGTGATCCTCCAGCAGCAGCTTCTGTGAAAGCTCTTTTTGAAGGACTTTTCTTCATCGAGAGTAGATATAGCTTATCT GATATCGGTAGGATGAAGCTGAATGCAAGATTGGGTTCTGATAAAGTATCCGGAGATATTTATACTCTGGAGAATAGTGA TATTGTAGGGGTTATAGAAGAGCTTATTAATATTCGTGATGGTAAAGGAAAGATTGACGACATTGATCACTTAGGGAATA GACGTGTGCGTTCTGTTGGTGAAATGGTTGAGAACCAATTTAGAATAGGTCTTTACCGTGTCGAGAAAGGTATTCGTGAA AGTATGTCGTTAGTTCATAAAGATAAGCTTATGCCTAAAGATATCGTGAATTCTAAGCCTATTACAGCAGCAATTAAAGA ATTCTTTACATCAGGTGCTTTATCGCAGTTTATGGATCAGGATAACCCTCTATCTGAAGTAACTCACAAGAGAAGAATCT CAGCACTAGGTCCAGGTGGTTTATCCCGTGACAGAGCAGGCTTCGAAGTTCGTGACGTTCACGCAACTCACTATGGTAGA TTATGTCCTATTGAGACTCCCGAAGGTCCAAATATTGGTCTTATTAACTCATTGGCAAGCTATGCAAGAGTTAATGATTA TGGCTTCTTAGAAGCACCATATAGAAAAGTCGTAAATGGTAAAGTAACTAATGAAATTGAGTATTTGTCAGCTATAGATG AAGATCATTATGTAATTGCGCAGGCATCGACTAAGCTTGATAAAAATAACCACTTTGTAGAAGATCTTATTCAGTGTCGT TCTGGTGGTGAAGCTATATTTACTGAGTCAAGTAGGGTTCAGTATATGGATGTTTCTGCCAAGCAGATGGTTTCGGCGGC GGCGGCATTGATACCATTTTTGGAACATGATGATGCTAACAGGGTATTGATGGGTGCAAACATGCAACGCCAAGCTGTAC CAACTCTAAAATCTGAAAAACCTTTAGTGGGTACAGGTATGGAGAAGATAGTCGCTAGAGATTCAGGTAACTGTATTGTT GCAAGAAATGCTGGAGAGATAGCTGAAGTAGATTCTAATAGAATAGTTATTAAAGTTGATACTGAAAAATCACAAACAAG TAAGTTAGTTGATATTTATAGCTTGACAAAGTTCAAACGCTCTAACAAAAATACTTGTATTAATCAGCGTCCAATAGTTA ATGTTGGTGATAAAGTTGAAGCAGGAGATATTCTAGCGGATGGTTTTGCAACAGATTTTGGCGAGTTGTCGCTTGGTCAT AATCTTATGGTTGCATTCATGCCGTGGAATGGTTATAACTTTGAGGATTCAATTTTACTTTCTGAAAGAATAGTAAAAGA TGATAAGTATACTAGTATCCATATCGAAGAATTTACTTGTGTTGCTCGTGATACTAAATTAGGTCCAGAAGAAGTAACAG CAGATATTCCAAATGTGAGTGAGTCAAGTCTTGCTAAGCTTGATGAGTCAGGTATTGTTCATATTGGTGCTAATGTTGAG GCGGGTGATATCTTAGTTGCTAAGATTACACCTAAGGCTGAGCAACAATTAACTCCAGAAGAAAGACTTCTAAGAGCTAT CTTTAATGAAAAAGCTTCAAATGTTGCTGATAGTTCATTAAGAATGCCAAGTGGTACTTCTGGTACTGTAATCAATGTTC AAGTCTTCGAAAATGATAAAGGCGGTAAAAGCAAAAGAGCCCTTAAGATTGAGAAAGAGTTAATTGACAAGGCGCGCAAG GATTTTGATGAGGAATTTGCTGTAATAGAATCTGTAGTTAAATCATCAATTGAAGCAGATGTTATAGGCGCTAAGATTCA AAAAGCAAAAGGTCTTAAGAAAGGTGCTGTTCTTACAAAAGAGTTCTTAGAAAAGCTACCTTTTGCTAAGTGGTTGGAAA TATCTTTTGAAGATGAAAAGCTTGAGCAAAAAGTACAGGATGCTAGAGAATACTATGAAGAAGCTAAGGTAGCTGTAGAC GCTAGATTCGAAACTAAGAAGAAATCAATCACTCAAAGTAATGAGCTATCTCCTGGTGTGCTTAAGACTGTTAAAGTTTT TGTTGCTATTAAGAAGCGTATTCAGCCTGGTGATAAAATGGCAGGACGTCACGGTAACAAGGGTGTAGTTTCAAGAGTAC TTCCTATTGAAGATATGCCGTACATGGAAGATGGTACTCCGGTAGATGTTTGTTTGAATCCATTAGGTATACCGTCGCGT ATGAATATAGGACAGATCCTTGAAGCGCATTTAGGTCTAGCATCTTATGGTTTAGGTAAGAGGGTAGAGCAAACACTTGA AAAGACAAGAAAAGCAGCTGAGTTAAGAAAAACTTTAGAAGAAGTCTATAATAGTGTGGGCGATAAAAAAGTTAATCTTA AAACTTTAAGTGATGAAGAAGTGCTTAATCTTTGTGAAAATCTAAAAGGAGGGGTGCCGATTGCAACTCCTGTATTCGAT GGTGCAAAAGAGGAAGATATTAAATCATTACTAAAAATAGGTGGTTTTGCGGCAAATGGTCAGATGAAACTATTTGATGG TCGTACTGGTAAAGCATTTGATAGGCACGTAACGGTTGGATACATGTATATGCTTAAACTAGACCATTTGGTAGATGATA AAATGCATGCTAGATCAACTGGATCTTATAGTCTAGTTACGCAGCAACCACTAGGTGGTAAAGCGCAATTTGGTGGTCAA AGATTTGGTGAGATGGAAGTTTGGGCATTACAAGCATATGGTGCTGCTTATACATTAAGAGAAATGTTAACGGTTAAATC GGATGATATAGCTGGTAGATCTAAGATGTATAAGAACATAGTTGATGGTAAGTTAACTATGAATGTAGATGTTCCAGAGT CATTCAATGTTTTAAGAAATGAAGTTAGAGCGTTGGGTATAGACATGGATTTTGACTATTCATCTGAGGAAGAATAA Protein sequence : MSYSYAEKKRIRKEFGVLPHILDVPYLLSVQTESYKKFLNADDAKGRLHSGLELVLKQSFPVESKNGQYELHYVDYQIGE PTFDETECQVRGATYDAPLNVKLRLVVYNKEALPNEKVVEDIREEYVYMGDIPLMTINGTFIINGTERVVVSQLHRSPGV FFSKDDSEDGAFSARIIPYRGSWLDFEFDSKGIVWARIDRKRKFCATVILKALGYTQEEILSNFSDSKTISFDNKGFALK LDNLSGMKGEVLKFDIVDENDKTIVKKNKKLTSRDIKKIKDAGVDSVAIDFDLVSTLRVAKDIVNEVTGEVIAYANDDVT ESLLEACVEVGMLELEVIDFITTERGRYISDTLKYDLTKNTDEALVEIYKVLRPGDPPAAASVKALFEGLFFIESRYSLS DIGRMKLNARLGSDKVSGDIYTLENSDIVGVIEELINIRDGKGKIDDIDHLGNRRVRSVGEMVENQFRIGLYRVEKGIRE SMSLVHKDKLMPKDIVNSKPITAAIKEFFTSGALSQFMDQDNPLSEVTHKRRISALGPGGLSRDRAGFEVRDVHATHYGR LCPIETPEGPNIGLINSLASYARVNDYGFLEAPYRKVVNGKVTNEIEYLSAIDEDHYVIAQASTKLDKNNHFVEDLIQCR SGGEAIFTESSRVQYMDVSAKQMVSAAAALIPFLEHDDANRVLMGANMQRQAVPTLKSEKPLVGTGMEKIVARDSGNCIV ARNAGEIAEVDSNRIVIKVDTEKSQTSKLVDIYSLTKFKRSNKNTCINQRPIVNVGDKVEAGDILADGFATDFGELSLGH NLMVAFMPWNGYNFEDSILLSERIVKDDKYTSIHIEEFTCVARDTKLGPEEVTADIPNVSESSLAKLDESGIVHIGANVE AGDILVAKITPKAEQQLTPEERLLRAIFNEKASNVADSSLRMPSGTSGTVINVQVFENDKGGKSKRALKIEKELIDKARK DFDEEFAVIESVVKSSIEADVIGAKIQKAKGLKKGAVLTKEFLEKLPFAKWLEISFEDEKLEQKVQDAREYYEEAKVAVD ARFETKKKSITQSNELSPGVLKTVKVFVAIKKRIQPGDKMAGRHGNKGVVSRVLPIEDMPYMEDGTPVDVCLNPLGIPSR MNIGQILEAHLGLASYGLGKRVEQTLEKTRKAAELRKTLEEVYNSVGDKKVNLKTLSDEEVLNLCENLKGGVPIATPVFD GAKEEDIKSLLKIGGFAANGQMKLFDGRTGKAFDRHVTVGYMYMLKLDHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQ RFGEMEVWALQAYGAAYTLREMLTVKSDDIAGRSKMYKNIVDGKLTMNVDVPESFNVLRNEVRALGIDMDFDYSSEEE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 57 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 57 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| F7308_0643 | YP_004647170.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 59 |
| F7308_0643 | YP_004647170.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 59 |
| F7308_0643 | YP_004647170.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 59 |
| F7308_0643 | YP_004647170.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 59 |
| F7308_0643 | YP_004647170.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 59 |
| F7308_0643 | YP_004647170.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 59 |
| F7308_0643 | YP_004647170.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 59 |
| F7308_0643 | YP_004647170.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 58 |
| F7308_0643 | YP_004647170.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 57 |
| F7308_0643 | YP_004647170.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 57 |
| F7308_0643 | YP_004647170.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 57 |
| F7308_0643 | YP_004647170.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 57 |
| F7308_0643 | YP_004647170.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 57 |
| F7308_0643 | YP_004647170.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 57 |
| F7308_0643 | YP_004647170.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 56 |
| F7308_0643 | YP_004647170.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 56 |
| F7308_0643 | YP_004647170.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 55 |
| F7308_0643 | YP_004647170.1 | DNA-directed RNA polymerase subunit beta | CP003583.1.gene2745. | Protein | 0.0 | 44 |
| F7308_0643 | YP_004647170.1 | DNA-directed RNA polymerase subunit beta | AE016830.1.gene3155. | Protein | 0.0 | 43 |
| F7308_0643 | YP_004647170.1 | DNA-directed RNA polymerase subunit beta | NC_012469.1.7686402. | Protein | 5e-175 | 42 |
