Gene Information

Name : HMPREF0538_20927 (HMPREF0538_20927)
Accession : YP_004649428.1
Strain : Lactobacillus reuteri SD2112
Genome accession: NC_015697
Putative virulence/resistance : Virulence
Product : carbon dioxide concentrating mechanism/carboxysome shell protein
Function : -
COG functional category : Q : Secondary metabolites biosynthesis, transport and catabolism
COG ID : COG4577
EC number : -
Position : 910342 - 910629 bp
Length : 288 bp
Strand : -
Note : COG: COG4577

DNA sequence : 
ATGAATAACGCATTAGGAATGATTGAAACTAAGGGTTTAGTTGCATCAATTGAAGCAGCTGATCAAATGGTAAAGGCAGC
TAACGTAACATTAACAGGTCAGGAAAAGATCGGTAGTGGATTGGTAACTGTTATGATTCGTGGTGATGTTGGTGCTGTAA
AGGCAGCTGTTGACGCTGGTGTCCAAGCTGCTGAAGGCGTTGGCGAAGTTGTATCATCTTACGTAATTCCACGTCCACAT
GAAGAAGTTGAAAAGATCTTACCAGGATCAAATAGTGACGCTGAATAA

Protein sequence : 
MNNALGMIETKGLVASIEAADQMVKAANVTLTGQEKIGSGLVTVMIRGDVGAVKAAVDAGVQAAEGVGEVVSSYVIPRPH
EEVEKILPGSNSDAE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42077.1 hypothetical protein Not tested PAI II 536 Protein 9e-13 70
unnamed CAD42078.1 hypothetical protein Not tested PAI II 536 Protein 4e-13 68
unnamed CAD42079.1 hypothetical protein Not tested PAI II 536 Protein 5e-13 66

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HMPREF0538_20927 YP_004649428.1 carbon dioxide concentrating mechanism/carboxysome shell protein VFG1596 Protein 4e-13 70
HMPREF0538_20927 YP_004649428.1 carbon dioxide concentrating mechanism/carboxysome shell protein VFG1597 Protein 2e-13 68
HMPREF0538_20927 YP_004649428.1 carbon dioxide concentrating mechanism/carboxysome shell protein VFG1598 Protein 2e-13 66